RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 SLC25A13Q9UJS0 675 aa22.31■■□□□ 1.16
CCDC28B-201ENST00000373602 VPS28Q9UK41 221 aa22.31■■□□□ 1.16
CCDC28B-201ENST00000373602 FZD4Q9ULV1 537 aa22.31■■□□□ 1.16
CCDC28B-201ENST00000373602 ACACBO00763 2458 aa22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 ATP9BO43861 1147 aa22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 RNASEH2AO75792 299 aaKnown RBP22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 ENDOD1O94919 500 aa22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 ADH1BP00325 375 aa22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 IGHV4-34P06331 123 aa22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 VAV1P15498 845 aa22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 CDK11BP21127 795 aaKnown RBP22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 C5AR1P21730 350 aa22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 RDXP35241 583 aaKnown RBP22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 PSMD8P48556 350 aa22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 AFF3P51826 1226 aaKnown RBP22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 GALCP54803 685 aa22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 UBXN1Q04323 297 aa22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 KIAA0895LQ68EN5 471 aa22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 LRRC31Q6UY01 552 aa22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 NEK11Q8NG66 645 aa22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 PCMTD1Q96MG8 357 aaPredicted RBP22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 OMDQ99983 421 aa22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 TM9SF3Q9HD45 589 aa22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 METTL5Q9NRN9 209 aaKnown RBP22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 TMPRSS4Q9NRS4 437 aa22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 WASF3Q9UPY6 502 aa22.3■■□□□ 1.16
CCDC28B-201ENST00000373602 NYNRINQ9P2P1 1898 aaKnown RBP22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 IGLV3-10A0A075B6K4 115 aa22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 A0A1B0GVT2 93 aa22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 C10orf142B7Z368 130 aa22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 ZNF883P0CG24 379 aa22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 UNGP13051 313 aaPredicted RBP22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 GOT1P17174 413 aa22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 CSNK1EP49674 416 aaKnown RBP22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 TYRO3Q06418 890 aa22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 HNRNPDQ14103 355 aaKnown RBP22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 ARTNQ5T4W7 220 aa22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 LRSAM1Q6UWE0 723 aa22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 SETD3Q86TU7 594 aaPredicted RBP22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 AADATQ8N5Z0 425 aa22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 EMC1Q8N766 993 aa22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 HAPLN3Q96S86 360 aa22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 PCDHB18PQ96TA0 734 aa22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 C11orf70Q9BRQ4 267 aa22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 MUC3BQ9H195 1237 aa22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 GAREM1Q9H706 876 aa22.29■■□□□ 1.16
CCDC28B-201ENST00000373602 SPAARA0A1B0GVQ0 90 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 LRRC72A6NJI9 287 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 E9PAM4 449 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 SH3BP5O60239 455 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 CER1O95813 267 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 IL1BP01584 269 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 RHOCP08134 193 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 GRIA4P48058 902 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 FOXC1Q12948 553 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 TEAD4Q15561 434 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 HLA-BQ31612 363 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 ACCSLQ4AC99 568 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 NCEH1Q6PIU2 408 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 FAM131BQ86XD5 332 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 SH2D3CQ8N5H7 860 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 OR2T34Q8NGX1 318 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 SLC30A5Q8TAD4 765 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 PSMB7Q99436 277 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 IL21RQ9HBE5 538 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 MPP6Q9NZW5 540 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 TMEM63CQ9P1W3 806 aa22.28■■□□□ 1.16
CCDC28B-201ENST00000373602 FAM47DPA6NHR8 397 aa22.27■■□□□ 1.16
CCDC28B-201ENST00000373602 FAM193AP78312 1265 aa22.27■■□□□ 1.16
CCDC28B-201ENST00000373602 KRT83P78385 493 aa22.27■■□□□ 1.16
CCDC28B-201ENST00000373602 SIM1P81133 766 aaPredicted RBP22.27■■□□□ 1.16
CCDC28B-201ENST00000373602 ATP11AP98196 1134 aa22.27■■□□□ 1.16
CCDC28B-201ENST00000373602 PTP4A2Q12974 167 aa22.27■■□□□ 1.16
CCDC28B-201ENST00000373602 DLG2Q15700 870 aa22.27■■□□□ 1.16
CCDC28B-201ENST00000373602 KIF19Q2TAC6 998 aa22.27■■□□□ 1.16
CCDC28B-201ENST00000373602 PHLDB2Q86SQ0 1253 aa22.27■■□□□ 1.16
CCDC28B-201ENST00000373602 AOPEPQ8N6M6 819 aa22.27■■□□□ 1.16
CCDC28B-201ENST00000373602 RXFP2Q8WXD0 754 aa22.27■■□□□ 1.16
CCDC28B-201ENST00000373602 OR8D1Q8WZ84 308 aa22.27■■□□□ 1.16
CCDC28B-201ENST00000373602 HS3ST2Q9Y278 367 aa22.27■■□□□ 1.16
CCDC28B-201ENST00000373602 A0A1W2PPC4 97 aa22.26■■□□□ 1.15
CCDC28B-201ENST00000373602 C2CD4BA6NLJ0 364 aa22.26■■□□□ 1.15
CCDC28B-201ENST00000373602 ATP1A3P13637 1013 aa22.26■■□□□ 1.15
CCDC28B-201ENST00000373602 GSCP56915 257 aaPredicted RBP22.26■■□□□ 1.15
CCDC28B-201ENST00000373602 CLEC16AQ2KHT3 1053 aa22.26■■□□□ 1.15
CCDC28B-201ENST00000373602 CCDC14Q49A88 953 aa22.26■■□□□ 1.15
CCDC28B-201ENST00000373602 C6orf118Q5T5N4 469 aa22.26■■□□□ 1.15
CCDC28B-201ENST00000373602 TFAP2DQ7Z6R9 452 aa22.26■■□□□ 1.15
CCDC28B-201ENST00000373602 DSG4Q86SJ6 1040 aa22.26■■□□□ 1.15
CCDC28B-201ENST00000373602 NAXDQ8IW45 347 aa22.26■■□□□ 1.15
CCDC28B-201ENST00000373602 FAM131CQ96AQ9 280 aa22.26■■□□□ 1.15
CCDC28B-201ENST00000373602 CAMK1GQ96NX5 476 aa22.26■■□□□ 1.15
CCDC28B-201ENST00000373602 C2orf49Q9BVC5 232 aaPredicted RBP22.26■■□□□ 1.15
CCDC28B-201ENST00000373602 TM7SF3Q9NS93 570 aa22.26■■□□□ 1.15
CCDC28B-201ENST00000373602 ZNF212Q9UDV6 495 aa22.26■■□□□ 1.15
CCDC28B-201ENST00000373602 VPS51Q9UID3 782 aa22.26■■□□□ 1.15
CCDC28B-201ENST00000373602 ANKRD6Q9Y2G4 727 aa22.26■■□□□ 1.15
CCDC28B-201ENST00000373602 FNDC3AQ9Y2H6 1198 aaKnown RBP22.26■■□□□ 1.15
CCDC28B-201ENST00000373602 A0A0D9SEW6 157 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 MCF2LO15068 1137 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms