RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 UNC5AQ6ZN44 842 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 FAM47BQ8NA70 645 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 TRIM39Q9HCM9 518 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 ZNRF3Q9ULT6 936 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 PSMD13Q9UNM6 376 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 GAKO14976 1311 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 TMEM114B3SHH9 223 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 MAP4K3Q8IVH8 894 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 TBC1D19Q8N5T2 526 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 SYTL5Q8TDW5 730 aaPredicted RBP19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 LRRC4CQ9HCJ2 640 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 S100A14Q9HCY8 104 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 R3HDM2Q9Y2K5 976 aaKnown RBP19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 GNG14A0A1W2PPG7 69 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 CRTAMO95727 393 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 ZBTB45Q96K62 511 aaPredicted RBP19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 KLHL20Q9Y2M5 609 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 SH3GLB1Q9Y371 365 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 ANKRD26Q9UPS8 1709 aa19.86■□□□□ 0.77
CCDC88B-202ENST00000356786 B3GAT3O94766 335 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 IRF1P10914 325 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 TKTL1P51854 596 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 KHDC1Q4VXA5 237 aaKnown RBP19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 C11orf96Q7Z7L8 435 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 BORCS5Q969J3 196 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 STN1Q9H668 368 aaKnown RBP19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 TBC1D13Q9NVG8 400 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 LSM7Q9UK45 103 aaKnown RBP19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 TRHDEQ9UKU6 1024 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 PRPF19Q9UMS4 504 aaKnown RBP19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 HBS1LQ9Y450 684 aaKnown RBP19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 SNAP91O60641 907 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 KRT6AP02538 564 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 KRT6BP04259 564 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 VCLP18206 1134 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 KRT6CP48668 564 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 LPIN1Q14693 890 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 ADGRF2Q8IZF7 708 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 EHD3Q9NZN3 535 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 FOXO6A8MYZ6 492 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 TM7SF2O76062 418 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 RPS7P62081 194 aaKnown RBP19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 ARMC3Q5W041 872 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 ACMSDQ8TDX5 336 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 PRDM5Q9NQX1 630 aaPredicted RBP19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 POLLQ9UGP5 575 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 E5RJQ4 531 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 BIRC5O15392 142 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 GRIA4P48058 902 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 CCT3P49368 545 aaKnown RBP19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 SPIDRQ14159 915 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 TRIM71Q2Q1W2 868 aaKnown RBP19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 ATG14Q6ZNE5 492 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 TNS4Q8IZW8 715 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 GMCL1P1Q8NEA9 526 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 PDGFCQ9NRA1 345 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 TMX2Q9Y320 296 aa19.85■□□□□ 0.77
CCDC88B-202ENST00000356786 KIF1AQ12756 1690 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 CENPXA8MT69 81 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 CYB561D2O14569 222 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 TRMUO75648 421 aaKnown RBP19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 LBPP18428 481 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 YWHAZP63104 245 aaKnown RBP19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 MARC1Q5VT66 337 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 BBS12Q6ZW61 710 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 KRT73Q86Y46 540 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 ADHFE1Q8IWW8 467 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 CERS2Q96G23 380 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 ACE2Q9BYF1 805 aaPredicted RBP19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 ENTPD7Q9NQZ7 604 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 C2orf71A6NGG8 1288 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 HACD1B0YJ81 288 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 PDE9AO76083 593 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 FBXO21O94952 628 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 CYP1A1P04798 512 aaPredicted RBP19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 TCF3P15923 654 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 PRAMEF18Q5VWM3 479 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 FASTKD5Q7L8L6 764 aaKnown RBP19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 DNAJB14Q8TBM8 379 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 SERHL2Q9H4I8 314 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 SERHLQ9NQF3 203 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 DDTLA6NHG4 134 aaPredicted RBP19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 ANXA6P08133 673 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 RPL7AP62424 266 aaKnown RBP19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 C15orf59Q2T9L4 293 aaPredicted RBP19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 TCF12Q99081 682 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 TSEN34Q9BSV6 310 aaKnown RBP19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 IDH3BO43837 385 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 CCNT2O60583 730 aaKnown RBP19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 USP4Q13107 963 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 SPESP1Q6UW49 350 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 BRSK2Q8IWQ3 736 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 OR52K1Q8NGK4 314 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 ACTRT2Q8TDY3 377 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 TLCD1Q96CP7 247 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 TPD52L3Q96J77 140 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 TEKT5Q96M29 485 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 PURBQ96QR8 312 aaKnown RBP19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 FANCEQ9HB96 536 aa19.84■□□□□ 0.77
CCDC88B-202ENST00000356786 VPS45Q9NRW7 570 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms