RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 TSHRP16473 764 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 PSEN1P49768 467 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 NDST1P52848 882 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 SPIRE1Q08AE8 756 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 ACSM2AQ08AH3 577 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 SPANXN2Q5MJ10 180 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 ACSM2BQ68CK6 577 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 TTI2Q6NXR4 508 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 KIAA0408Q6ZU52 694 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 PAGE2Q7Z2X7 111 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 COLGALT2Q8IYK4 626 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 REPS2Q8NFH8 660 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 CERKQ8TCT0 537 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 NACC2Q96BF6 587 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 PDCD2LQ9BRP1 358 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 KIAA1683Q9H0B3 1180 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 POMKQ9H5K3 350 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 RERGLQ9H628 205 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 NRDE2Q9H7Z3 1164 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 SAR1AQ9NR31 198 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 CRNNQ9UBG3 495 aaPredicted RBP6.58□□□□□ -1.36
UPF2-201ENST00000356352 LIMD1Q9UGP4 676 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 ANGPT4Q9Y264 503 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 SIK3Q9Y2K2 1263 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 MFHAS1Q9Y4C4 1052 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 C1QTNF3-AMACRE9PGA6 284 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 PDE2AO00408 941 aaPredicted RBP6.57□□□□□ -1.36
UPF2-201ENST00000356352 ADCY6O43306 1168 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 TSC22D2O75157 780 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 GCATO75600 419 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 ME2P23368 584 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 EIF4BP23588 611 aaKnown RBP6.57□□□□□ -1.36
UPF2-201ENST00000356352 AKAP5P24588 427 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 TGFBR2P37173 567 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 SLC34A1Q06495 639 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 MTM1Q13496 603 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 PARP6Q2NL67 630 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 FAM171A1Q5VUB5 890 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 GPSM1Q86YR5 675 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 REXO1L1PQ8IX06 675 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 ZCCHC7Q8N3Z6 543 aaKnown RBP6.57□□□□□ -1.36
UPF2-201ENST00000356352 SYTL5Q8TDW5 730 aaPredicted RBP6.57□□□□□ -1.36
UPF2-201ENST00000356352 GDPD5Q8WTR4 605 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 ASZ1Q8WWH4 475 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 OSMRQ99650 979 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 POLR1BQ9H9Y6 1135 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 TMEM39AQ9NV64 488 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 TAF6LQ9Y6J9 622 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 TRIM43BA6NCK2 446 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 BTN3A1O00481 513 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 ACKR2O00590 384 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 CLOCKO15516 846 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 NDUFS2O75306 463 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 CCNDBP1O95273 360 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 CTDNEP1O95476 244 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 HMGCRP04035 888 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 ANXA5P08758 320 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 CTSEP14091 401 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 TTKP33981 857 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 PTSQ03393 145 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 MKRN4PQ13434 485 aaPredicted RBP6.57□□□□□ -1.36
UPF2-201ENST00000356352 PRAMEF18Q5VWM3 479 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 ZNF470Q6ECI4 717 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 USP49Q70CQ1 688 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 UNC93AQ86WB7 457 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 ZDHHC13Q8IUH4 622 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 BRSK2Q8IWQ3 736 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 APOL2Q9BQE5 337 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 HGH1Q9BTY7 390 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 C6orf62Q9GZU0 229 aaPredicted RBP6.57□□□□□ -1.36
UPF2-201ENST00000356352 SEMA6BQ9H3T3 888 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 INVSQ9Y283 1065 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 MADDQ8WXG6 1647 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 ASTN2O75129 1339 aaPredicted RBP6.57□□□□□ -1.36
UPF2-201ENST00000356352 FRMPD1Q5SYB0 1578 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 A0A096LPK6 155 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 TRAV19A0A0A6YYK7 116 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 MSCO60682 206 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 OR6B1O95007 311 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 ERBB2P04626 1255 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 RAG1P15918 1043 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 CES1P23141 567 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 MGAT1P26572 445 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 THOP1P52888 689 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 SNRPD1P62314 119 aaKnown RBP6.57□□□□□ -1.36
UPF2-201ENST00000356352 RRP1BQ14684 758 aaKnown RBP6.57□□□□□ -1.36
UPF2-201ENST00000356352 KLHL12Q53G59 568 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 FBXL19Q6PCT2 694 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 KLHL17Q6TDP4 642 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 AFTPHQ6ULP2 937 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 EXOC3L1Q86VI1 746 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 OR6Y1Q8NGX8 325 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 ACTL9Q8TC94 416 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 EEF1AKMT1Q8WVE0 214 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 C2orf49Q9BVC5 232 aaPredicted RBP6.57□□□□□ -1.36
UPF2-201ENST00000356352 IL22Q9GZX6 179 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 RIBC2Q9H4K1 309 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 NAALADL1Q9UQQ1 740 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 SLC28A1O00337 649 aa6.57□□□□□ -1.36
UPF2-201ENST00000356352 RGL2O15211 777 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 112.2 ms