RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ITGA9Q13797 1035 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 TEDDM1Q5T9Z0 273 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 HIBCHQ6NVY1 386 aaPredicted RBP7□□□□□ -1.29
SF3B1-201ENST00000335508 CARNMT1Q8N4J0 409 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 ALLCQ8N6M5 410 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 ASB2Q96Q27 587 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 NUF2Q9BZD4 464 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 MOSPD1Q9UJG1 213 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 STK38LQ9Y2H1 464 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 MRPS17Q9Y2R5 130 aaKnown RBP7□□□□□ -1.29
SF3B1-201ENST00000335508 RHOBTB1O94844 696 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 NDST3O95803 873 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 EPOP01588 193 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 TAS1R3Q7RTX0 852 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 SPATA21Q7Z572 469 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 SDCCAG3Q96C92 435 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 BBS2Q9BXC9 721 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 SLC25A51Q9H1U9 297 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 GDF3Q9NR23 364 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 NUDT5Q9UKK9 219 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 KPNA5O15131 536 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 PAGE1O75459 146 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 POLR2EP19388 210 aaKnown RBP7□□□□□ -1.29
SF3B1-201ENST00000335508 RPL21P46778 160 aaKnown RBP7□□□□□ -1.29
SF3B1-201ENST00000335508 GBE1Q04446 702 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 MSLNQ13421 630 aaPredicted RBP7□□□□□ -1.29
SF3B1-201ENST00000335508 TTC19Q6DKK2 380 aaPredicted RBP7□□□□□ -1.29
SF3B1-201ENST00000335508 SERPINA13PQ6UXR4 307 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 KDM7AQ6ZMT4 941 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 MPP5Q8N3R9 675 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 RTL3Q8N8U3 475 aaKnown RBP7□□□□□ -1.29
SF3B1-201ENST00000335508 WFIKKN2Q8TEU8 576 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 LRRC15Q8TF66 581 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 CCT8L2Q96SF2 557 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 APOL2Q9BQE5 337 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 ANKZF1Q9H8Y5 726 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 EDIL3O43854 480 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 VAPBO95292 243 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 ASLP04424 464 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 TPBGLP0DKB5 382 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 IRF1P10914 325 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 FGFR1P11362 822 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 CRABP2P29373 138 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 PLOD1Q02809 727 aaPredicted RBP7□□□□□ -1.29
SF3B1-201ENST00000335508 GNA12Q03113 381 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 RFTN1Q14699 578 aaPredicted RBP7□□□□□ -1.29
SF3B1-201ENST00000335508 ANKRD20A8PQ5CZ79 823 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 SPANXN3Q5MJ09 141 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 ANKS6Q68DC2 871 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 NKAPQ8N5F7 415 aaKnown RBP7□□□□□ -1.29
SF3B1-201ENST00000335508 GIPC2Q8TF65 315 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 ZBTB10Q96DT7 871 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 RIPOR3Q96MK2 946 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 FICDQ9BVA6 458 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 GPAMQ9HCL2 828 aa7□□□□□ -1.29
SF3B1-201ENST00000335508 USP15Q9Y4E8 981 aaPredicted RBP7□□□□□ -1.29
SF3B1-201ENST00000335508 KLHL2O95198 593 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 KRT16P08779 473 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 HNRNPA1P09651 372 aaKnown RBP eCLIP6.99□□□□□ -1.291e-13■■■■□ 20.2
SF3B1-201ENST00000335508 GOT1P17174 413 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 CHRNB2P17787 502 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 LSP1P33241 339 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 ZRANB3Q5FWF4 1079 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 HP1BP3Q5SSJ5 553 aaPredicted RBP6.99□□□□□ -1.29
SF3B1-201ENST00000335508 RAP1GAP2Q684P5 730 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 KYAT3Q6YP21 454 aaKnown RBP6.99□□□□□ -1.29
SF3B1-201ENST00000335508 PLD4Q96BZ4 506 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 TEKT5Q96M29 485 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 PRPF18Q99633 342 aaKnown RBP6.99□□□□□ -1.29
SF3B1-201ENST00000335508 ETNK1Q9HBU6 452 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 GTSE1Q9NYZ3 720 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 LNPEPQ9UIQ6 1025 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 WDR91A4D1P6 747 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 GJB6O95452 261 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 IQCF3P0C7M6 154 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 KELP23276 732 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 PTPN7P35236 360 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 SKIV2L2P42285 1042 aaKnown RBP6.99□□□□□ -1.29
SF3B1-201ENST00000335508 LONRF1Q17RB8 773 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 KBTBD12Q3ZCT8 623 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 RTL10Q7L3V2 364 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 TMEM192Q8IY95 271 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 OVCA2Q8WZ82 227 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 MAML1Q92585 1016 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 PPP1R10Q96QC0 940 aaKnown RBP6.99□□□□□ -1.29
SF3B1-201ENST00000335508 MLPHQ9BV36 600 aaPredicted RBP6.99□□□□□ -1.29
SF3B1-201ENST00000335508 MRPL46Q9H2W6 279 aaKnown RBP6.99□□□□□ -1.29
SF3B1-201ENST00000335508 NFKB1P19838 968 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 HMOX2P30519 316 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 NDST2P52849 883 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 SH3BGRP55822 239 aaPredicted RBP6.99□□□□□ -1.29
SF3B1-201ENST00000335508 STX5Q13190 355 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 CYP1B1Q16678 543 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 SYTL3Q4VX76 610 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 MROH9Q5TGP6 573 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 ZNF470Q6ECI4 717 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 SHQ1Q6PI26 577 aaKnown RBP6.99□□□□□ -1.29
SF3B1-201ENST00000335508 USP45Q70EL2 814 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 TAC4Q86UU9 113 aa6.99□□□□□ -1.29
SF3B1-201ENST00000335508 TTC30AQ86WT1 665 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms