RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 KIF9Q9HAQ2 790 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 TDP1Q9NUW8 608 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 SH3BP1Q9Y3L3 701 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 ZFP37Q9Y6Q3 630 aaPredicted RBP15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 EIF3HO15372 352 aaKnown RBP eCLIP15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 HOXB8P17481 243 aaPredicted RBP15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 CEBPBP17676 345 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 POU3F3P20264 500 aaPredicted RBP15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 CHKAP35790 457 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 ETFBP38117 255 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 PAPOLAP51003 745 aaKnown RBP15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 NRLP54845 237 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 NTHL1P78549 312 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 SERINC3Q13530 473 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 KCTD19Q17RG1 926 aaPredicted RBP15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 PARP6Q2NL67 630 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 ANO4Q32M45 955 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 TEX44Q53QW1 395 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 PPP1R21Q6ZMI0 780 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 ARHGEF18Q6ZSZ5 1173 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 TFAP2DQ7Z6R9 452 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 ZNF567Q8N184 647 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 SH3RF2Q8TEC5 729 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 OTUB2Q96DC9 234 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 HMCESQ96FZ2 354 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 TEKT5Q96M29 485 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 ZNF599Q96NL3 588 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 PPP1R2P1Q96PQ5 205 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 RAB6BQ9NRW1 208 aa15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 IPO11Q9UI26 975 aaKnown RBP15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 MRPS23Q9Y3D9 190 aaKnown RBP15.27■□□□□ 0.04
CCDC88C-202ENST00000334448 NOTCH4Q99466 2003 aa15.27■□□□□ 0.03
CCDC88C-202ENST00000334448 DOCK4Q8N1I0 1966 aa15.27■□□□□ 0.03
CCDC88C-202ENST00000334448 LAMA3Q16787 3333 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 CXorf51AA0A1B0GTR3 108 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 E7ESA3 106 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 DFFAO00273 331 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 TMEM63AO94886 807 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 PRAMEF12O95522 483 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 METTL18O95568 372 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 OR1E1P30953 314 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 RPS24P62847 133 aaKnown RBP15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 RBM10P98175 930 aaKnown RBP15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 IL10RBQ08334 325 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 ZBTB17Q13105 803 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 HNRNPDQ14103 355 aaKnown RBP15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 TCEAL5Q5H9L2 206 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 ZNF697Q5TEC3 545 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 ITPRIPL1Q6GPH6 555 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 CXorf57Q6NSI4 855 aaKnown RBP15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 CHRDL2Q6WN34 429 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 B4GALNT4Q76KP1 1039 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 TRMT10CQ7L0Y3 403 aaKnown RBP15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 MTERF4Q7Z6M4 381 aaKnown RBP15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 CIR1Q86X95 450 aaPredicted RBP15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 CCDC33Q8N5R6 958 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 TEX26Q8N6G2 289 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 ARHGEF2Q92974 986 aaKnown RBP15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 PKNOX2Q96KN3 472 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 GBA3Q9H227 469 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 ZNF576Q9H609 170 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 PIDD1Q9HB75 910 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 TRPV4Q9HBA0 871 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 PDFQ9HBH1 243 aa15.26■□□□□ 0.03
CCDC88C-202ENST00000334448 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 TYW5A2RUC4 315 aaKnown RBP15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 SPDYE4A6NLX3 237 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 ERI2A8K979 691 aaKnown RBP15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 KCNK1O00180 336 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 RFXAPO00287 272 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 PRAMEF11O60813 436 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 SASH3O75995 380 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 CCNB1P14635 433 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 HOXD9P28356 352 aaPredicted RBP15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 MAGEA3P43357 314 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 TNNT3P45378 269 aaPredicted RBP15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 SGSHP51688 502 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 BASP1P80723 227 aaKnown RBP15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 GNA12Q03113 381 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 DHX9Q08211 1270 aaKnown RBP15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 ZNF177Q13360 481 aaPredicted RBP15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 POLD3Q15054 466 aaPredicted RBP15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 MPPE1Q53F39 396 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 TMCO4Q5TGY1 634 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 ANKRD22Q5VYY1 191 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 ANKRD54Q6NXT1 300 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 SYCE2Q6PIF2 218 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 TMC5Q6UXY8 1006 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 ARHGAP36Q6ZRI8 547 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 BBS7Q8IWZ6 715 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 IQCKQ8N0W5 287 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 CNTD1Q8N815 330 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 NETO2Q8NC67 525 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 RIN3Q8TB24 985 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 LRRN4Q8WUT4 740 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 DEPDC1BQ8WUY9 529 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 ACE2Q9BYF1 805 aaPredicted RBP15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 ETNK1Q9HBU6 452 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 OBP2AQ9NY56 170 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 GDE1Q9NZC3 331 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms