RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 UBA3Q8TBC4 463 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 TCP10LQ8TDR4 215 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 HDAC7Q8WUI4 952 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 OXCT2Q9BYC2 517 aaPredicted RBP8.34□□□□□ -1.07
VPS41-202ENST00000310301 TMEM8AQ9HCN3 771 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 ROBO3Q96MS0 1386 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 TIMM44O43615 452 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 CBFA2T3O75081 653 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 CPSF4O95639 269 aaKnown RBP8.34□□□□□ -1.07
VPS41-202ENST00000310301 GSTM1P09488 218 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 MYL4P12829 197 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 CNTFP26441 200 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 FCHO2Q0JRZ9 810 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 FAM171A1Q5VUB5 890 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 DDX53Q86TM3 631 aaKnown RBP8.34□□□□□ -1.07
VPS41-202ENST00000310301 LINC00523Q86TU6 105 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 FAM228AQ86W67 206 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 LRRC49Q8IUZ0 686 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 COPS5Q92905 334 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 CDRT15Q96T59 188 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 RIBC2Q9H4K1 309 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 KRCC1Q9NPI7 259 aaPredicted RBP8.34□□□□□ -1.07
VPS41-202ENST00000310301 ZNF446Q9NWS9 450 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 WBP1LQ9NX94 342 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 GTF3C4Q9UKN8 822 aa8.34□□□□□ -1.07
VPS41-202ENST00000310301 PRR23AA6NEV1 266 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 ME2P23368 584 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 PON1P27169 355 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 HARS2P49590 506 aaKnown RBP8.33□□□□□ -1.08
VPS41-202ENST00000310301 SRP54P61011 504 aaKnown RBP8.33□□□□□ -1.08
VPS41-202ENST00000310301 C11orf96Q7Z7L8 435 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 STK32CQ86UX6 486 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 CYP4Z1Q86W10 505 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 CACTIN-AS1Q8N1I8 211 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 HPS1Q92902 700 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 SH2D3AQ9BRG2 576 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 FRMD8P1Q9BZ68 369 aaPredicted RBP8.33□□□□□ -1.08
VPS41-202ENST00000310301 SDR42E2A6NKP2 422 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 ASMTLO95671 621 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 ACADSBP45954 432 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 LGALS3BPQ08380 585 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 CNTN1Q12860 1018 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 CDC16Q13042 620 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 STRA8Q7Z7C7 330 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 SETD9Q8NE22 299 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 ZNF75CPQ92670 426 aaPredicted RBP8.33□□□□□ -1.08
VPS41-202ENST00000310301 FAM120BQ96EK7 910 aaKnown RBP8.33□□□□□ -1.08
VPS41-202ENST00000310301 NSMCE2Q96MF7 247 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 PCDHB5Q9Y5E4 795 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 ZNF536O15090 1300 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 CXCL14O95715 111 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 GLUD1P00367 558 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 MRPS22P82650 360 aaKnown RBP8.33□□□□□ -1.08
VPS41-202ENST00000310301 DDI2Q5TDH0 399 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 PRMT9Q6P2P2 845 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 EXOC3L1Q86VI1 746 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 BHLHE22Q8NFJ8 381 aaPredicted RBP8.33□□□□□ -1.08
VPS41-202ENST00000310301 SLC7A14Q8TBB6 771 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 SLC5A5Q92911 643 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 RNF145Q96MT1 663 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 TARS2Q9BW92 718 aaKnown RBP8.33□□□□□ -1.08
VPS41-202ENST00000310301 RGS18Q9NS28 235 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 KLK14Q9P0G3 267 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 GIT1Q9Y2X7 761 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 CCDC182A6NF36 153 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 PROCP04070 461 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 ETFBP38117 255 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 KCNJ2P63252 427 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 GPM6BQ13491 265 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 DGCR6Q14129 220 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 TSNQ15631 228 aaKnown RBP8.33□□□□□ -1.08
VPS41-202ENST00000310301 SWT1Q5T5J6 900 aaKnown RBP8.33□□□□□ -1.08
VPS41-202ENST00000310301 MZT2BQ6NZ67 158 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 DLK2Q6UY11 383 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 TCAIMQ8N3R3 496 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 DPP10Q8N608 796 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 TSEN2Q8NCE0 465 aaKnown RBP8.33□□□□□ -1.08
VPS41-202ENST00000310301 PSMA8Q8TAA3 256 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 TRPC4APQ8TEL6 797 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 TMEM121Q9BTD3 319 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 KIFC1Q9BW19 673 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 NUAK2Q9H093 628 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 ABI2Q9NYB9 513 aaPredicted RBP8.33□□□□□ -1.08
VPS41-202ENST00000310301 TRMT6Q9UJA5 497 aaKnown RBP8.33□□□□□ -1.08
VPS41-202ENST00000310301 PDGFRBP09619 1106 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 PTENP60484 403 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 TFDP3Q5H9I0 405 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 KRT74Q7RTS7 529 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 NET1Q7Z628 596 aaPredicted RBP8.33□□□□□ -1.08
VPS41-202ENST00000310301 GDF3Q9NR23 364 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 KLHL1Q9NR64 748 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 DPP3Q9NY33 737 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 RSL24D1Q9UHA3 163 aaKnown RBP8.33□□□□□ -1.08
VPS41-202ENST00000310301 STON1Q9Y6Q2 735 aa8.33□□□□□ -1.08
VPS41-202ENST00000310301 ACKR2O00590 384 aa8.32□□□□□ -1.08
VPS41-202ENST00000310301 GUCY1B2O75343 617 aa8.32□□□□□ -1.08
VPS41-202ENST00000310301 MAP3K6O95382 1288 aa8.32□□□□□ -1.08
VPS41-202ENST00000310301 CTDNEP1O95476 244 aa8.32□□□□□ -1.08
VPS41-202ENST00000310301 MT-CO1P00395 513 aa8.32□□□□□ -1.08
VPS41-202ENST00000310301 SLC2A3P11169 496 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms