RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 POPDC2Q9HBU9 364 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 ST7Q9NRC1 585 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 CLCA2Q9UQC9 943 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 NAALADL1Q9UQQ1 740 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 A0A1B0GVM2 712 aa15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 TCAF2A6NFQ2 919 aa15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 C1QTNF3-AMACRE9PGA6 284 aa15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 PRAMEF26H0Y7S4 382 aa15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 PSMA7O14818 248 aa15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 WNT9AO14904 365 aa15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 ALOX15BO15296 676 aa15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 PLRG1O43660 514 aaKnown RBP15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 RNGTTO60942 597 aaKnown RBP15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 GLDCP23378 1020 aa15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 PPP2CBP62714 309 aa15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 PPP2CAP67775 309 aa15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 ZNF211Q13398 564 aaPredicted RBP15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 PNOCQ13519 176 aa15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 ZC3H12AQ5D1E8 599 aaKnown RBP15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 RAP1GAP2Q684P5 730 aa15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 KANSL1Q7Z3B3 1105 aa15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 DCBLD1Q8N8Z6 715 aa15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 ERCC4Q92889 916 aaPredicted RBP15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 ZSWIM1Q9BR11 485 aa15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 PREBQ9HCU5 417 aa15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 HOOK1Q9UJC3 728 aaKnown RBP15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 SLC25A13Q9UJS0 675 aa15.23■□□□□ 0.03
CCDC88B-201ENST00000301897 COL6A6A6NMZ7 2263 aa15.22■□□□□ 0.03
CCDC88B-201ENST00000301897 KCNU1A8MYU2 1149 aa15.22■□□□□ 0.03
CCDC88B-201ENST00000301897 RNF225M0QZC1 329 aaPredicted RBP15.22■□□□□ 0.03
CCDC88B-201ENST00000301897 MED7O43513 233 aa15.22■□□□□ 0.03
CCDC88B-201ENST00000301897 PPP1R2P41236 205 aa15.22■□□□□ 0.03
CCDC88B-201ENST00000301897 GPD2P43304 727 aa15.22■□□□□ 0.03
CCDC88B-201ENST00000301897 STK19P49842 368 aaPredicted RBP15.22■□□□□ 0.03
CCDC88B-201ENST00000301897 YWHAZP63104 245 aaKnown RBP15.22■□□□□ 0.03
CCDC88B-201ENST00000301897 PROX2Q3B8N5 592 aa15.22■□□□□ 0.03
CCDC88B-201ENST00000301897 TBC1D25Q3MII6 688 aa15.22■□□□□ 0.03
CCDC88B-201ENST00000301897 CCDC40Q4G0X9 1142 aa15.22■□□□□ 0.03
CCDC88B-201ENST00000301897 GPR155Q7Z3F1 870 aa15.22■□□□□ 0.03
CCDC88B-201ENST00000301897 SPATS2Q86XZ4 545 aaKnown RBP15.22■□□□□ 0.03
CCDC88B-201ENST00000301897 CCAR2Q8N163 923 aaKnown RBP15.22■□□□□ 0.03
CCDC88B-201ENST00000301897 FRS2Q8WU20 508 aa15.22■□□□□ 0.03
CCDC88B-201ENST00000301897 THAP9Q9H5L6 903 aa15.22■□□□□ 0.03
CCDC88B-201ENST00000301897 ARHGAP20Q9P2F6 1191 aa15.22■□□□□ 0.03
CCDC88B-201ENST00000301897 FARP1Q9Y4F1 1045 aaPredicted RBP15.22■□□□□ 0.03
CCDC88B-201ENST00000301897 ATP9BO43861 1147 aa15.21■□□□□ 0.03
CCDC88B-201ENST00000301897 BRINP1O60477 761 aa15.21■□□□□ 0.03
CCDC88B-201ENST00000301897 TRUB2O95900 331 aaKnown RBP15.21■□□□□ 0.03
CCDC88B-201ENST00000301897 IGLV3-25P01717 112 aa15.21■□□□□ 0.03
CCDC88B-201ENST00000301897 PDGFRAP16234 1089 aa15.21■□□□□ 0.03
CCDC88B-201ENST00000301897 PMS1P54277 932 aaKnown RBP15.21■□□□□ 0.03
CCDC88B-201ENST00000301897 CLDN6P56747 220 aa15.21■□□□□ 0.03
CCDC88B-201ENST00000301897 SYPL2Q5VXT5 272 aa15.21■□□□□ 0.03
CCDC88B-201ENST00000301897 NEK5Q6P3R8 708 aa15.21■□□□□ 0.03
CCDC88B-201ENST00000301897 SMARCE1Q969G3 411 aa15.21■□□□□ 0.03
CCDC88B-201ENST00000301897 KLHDC7BQ96G42 594 aa15.21■□□□□ 0.03
CCDC88B-201ENST00000301897 DHTKD1Q96HY7 919 aaPredicted RBP15.21■□□□□ 0.03
CCDC88B-201ENST00000301897 SLC4A5Q9BY07 1137 aa15.21■□□□□ 0.03
CCDC88B-201ENST00000301897 EVA1BQ9NVM1 165 aa15.21■□□□□ 0.03
CCDC88B-201ENST00000301897 XPO7Q9UIA9 1087 aaKnown RBP15.21■□□□□ 0.03
CCDC88B-201ENST00000301897 CNTN6Q9UQ52 1028 aa15.21■□□□□ 0.03
CCDC88B-201ENST00000301897 RAI2Q9Y5P3 530 aa15.21■□□□□ 0.03
CCDC88B-201ENST00000301897 DOCK9Q9BZ29 2069 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 ATMQ13315 3056 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 MCF2LO15068 1137 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 RTN2O75298 545 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 MT-CO3P00414 261 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 PRB1P04280 392 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 ZNF18P17022 549 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 MAT2AP31153 395 aaKnown RBP15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 CCR1P32246 355 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 UCNP55089 124 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 DAB2P98082 770 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 CDK17Q00537 523 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 INSM1Q01101 510 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 ACCSLQ4AC99 568 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 AGBL4Q5VU57 503 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 TMEM110Q86TL2 294 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 FMR1NBQ8N0W7 255 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 LSMEM2Q8N112 164 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 OR4C6Q8NH72 309 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 LMO3Q8TAP4 145 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 SPATA20Q8TB22 786 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 FAM174AQ8TBP5 190 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 KAT5Q92993 513 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 RNF34Q969K3 372 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 CCDC114Q96M63 670 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 ZNF578Q96N58 590 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 PRMT1Q99873 361 aaKnown RBP15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 PPM1HQ9ULR3 514 aa15.2■□□□□ 0.02
CCDC88B-201ENST00000301897 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 TRIM49BA6NDI0 452 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 GOLGA6L4A6NEF3 574 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 SIGLEC6O43699 453 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 C1QL1O75973 258 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 GLI1P08151 1106 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 ALPPL2P10696 532 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 VAV1P15498 845 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 TLE3Q04726 772 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms