RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 SPAG7O75391 227 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 OR1E1P30953 314 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 IRS1P35568 1242 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 SEC24CP53992 1094 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 HTRA4P83105 476 aaPredicted RBP16.87■□□□□ 0.29
USP4-201ENST00000265560 PPP1R21Q6ZMI0 780 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 PSMG2Q969U7 264 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 MLPHQ9BV36 600 aaPredicted RBP16.87■□□□□ 0.29
USP4-201ENST00000265560 PPANQ9NQ55 473 aaKnown RBP16.87■□□□□ 0.29
USP4-201ENST00000265560 A0A1W2PPM1 405 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 PER2O15055 1255 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 CCL16O15467 120 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 LILRB3O75022 631 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 CPP00450 1065 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 CTSAP10619 480 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 CORO1AP31146 461 aaKnown RBP16.87■□□□□ 0.29
USP4-201ENST00000265560 EPHB3P54753 998 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 PARP6Q2NL67 630 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 C9orf50Q5SZB4 431 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 NLRP14Q86W24 1093 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 C4orf33Q8N1A6 199 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 MAB21L3Q8N8X9 362 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 OXNAD1Q96HP4 312 aaPredicted RBP16.87■□□□□ 0.29
USP4-201ENST00000265560 SIGLEC10Q96LC7 697 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 CCDC77Q9BR77 488 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 OXCT2Q9BYC2 517 aaPredicted RBP16.87■□□□□ 0.29
USP4-201ENST00000265560 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.87■□□□□ 0.29
USP4-201ENST00000265560 MBL2P11226 248 aaPredicted RBP16.87■□□□□ 0.29
USP4-201ENST00000265560 GABRR2P28476 465 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 PPM1AP35813 382 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 ITKQ08881 620 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 STAT4Q14765 748 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 FAM133BQ5BKY9 247 aaKnown RBP16.87■□□□□ 0.29
USP4-201ENST00000265560 ANKRD42Q8N9B4 389 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 DNAAF3Q8N9W5 541 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 C1orf74Q96LT6 269 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 TTC25Q96NG3 672 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 RBM22Q9NW64 420 aaKnown RBP eCLIP16.87■□□□□ 0.29
USP4-201ENST00000265560 ZFP37Q9Y6Q3 630 aaPredicted RBP16.87■□□□□ 0.29
USP4-201ENST00000265560 ATP9BO43861 1147 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 KRT15P19012 456 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 TACR2P21452 398 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 IFNAR2P48551 515 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 HARS2P49590 506 aaKnown RBP16.86■□□□□ 0.29
USP4-201ENST00000265560 KDM7AQ6ZMT4 941 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 RBM23Q86U06 439 aaKnown RBP16.86■□□□□ 0.29
USP4-201ENST00000265560 DPF3Q92784 378 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 TEKT5Q96M29 485 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 RAD9AQ99638 391 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 NCAM2O15394 837 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 FGF10O15520 208 aaPredicted RBP16.86■□□□□ 0.29
USP4-201ENST00000265560 PMPCBO75439 489 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 STC2O76061 302 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 IGLV3-27P01718 113 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 SLC10A7Q0GE19 358 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 PCSK7Q16549 785 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 CERCAMQ5T4B2 595 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 UNC5AQ6ZN44 842 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 GAREM2Q75VX8 874 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 PPM1NQ8N819 430 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 POF1BQ8WVV4 589 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 PAFAH2Q99487 392 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 CORO1BQ9BR76 489 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 C12orf65Q9H3J6 166 aaKnown RBP16.86■□□□□ 0.29
USP4-201ENST00000265560 SYBUQ9NX95 663 aa16.86■□□□□ 0.29
USP4-201ENST00000265560 RASA4BC9J798 803 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 RASA4O43374 803 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 NEBLO76041 1014 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 C8AP07357 584 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 HOXC13P31276 330 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 MPP2Q14168 576 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 TCEAL8Q8IYN2 117 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 IPMKQ8NFU5 416 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 PRMT1Q99873 361 aaKnown RBP16.85■□□□□ 0.29
USP4-201ENST00000265560 SPON2Q9BUD6 331 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 ROPN1BQ9BZX4 212 aaPredicted RBP16.85■□□□□ 0.29
USP4-201ENST00000265560 ROPN1Q9HAT0 212 aaPredicted RBP16.85■□□□□ 0.29
USP4-201ENST00000265560 SMYD2Q9NRG4 433 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 A0A1W2PRU2 124 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 CDH16O75309 829 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 HLA-DQB2P05538 268 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 CHN1P15882 459 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 GLDCP23378 1020 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 FDFT1P37268 417 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 SMAD3P84022 425 aaKnown RBP16.85■□□□□ 0.29
USP4-201ENST00000265560 ST13P5Q8NFI4 369 aaPredicted RBP16.85■□□□□ 0.29
USP4-201ENST00000265560 OR7D4Q8NG98 312 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 TMEM109Q9BVC6 243 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 F5H5T6 163 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 AGTP01019 485 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 MYL4P12829 197 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 HDCP19113 662 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 CLP1Q92989 425 aaKnown RBP16.85■□□□□ 0.29
USP4-201ENST00000265560 NT5MQ9NPB1 228 aa16.85■□□□□ 0.29
USP4-201ENST00000265560 GOLGA8TH3BQL2 631 aa16.84■□□□□ 0.29
USP4-201ENST00000265560 ACSL4O60488 711 aa16.84■□□□□ 0.29
USP4-201ENST00000265560 RHOQP17081 205 aa16.84■□□□□ 0.29
USP4-201ENST00000265560 TPSB2P20231 275 aa16.84■□□□□ 0.29
USP4-201ENST00000265560 MDH1P40925 334 aaKnown RBP16.84■□□□□ 0.29
USP4-201ENST00000265560 TPSAB1Q15661 275 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms