RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 PORP16435 677 aaPredicted RBP14.65□□□□□ -0.06
SDC1-201ENST00000254351 DPEP1P16444 411 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 TSHRP16473 764 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 ZNF182P17025 639 aaPredicted RBP14.65□□□□□ -0.06
SDC1-201ENST00000254351 GPD1P21695 349 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 ASPAP45381 313 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 TMED10P49755 219 aaKnown RBP14.65□□□□□ -0.06
SDC1-201ENST00000254351 C21orf59P57076 290 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 ACTR2P61160 394 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 PLCL1Q15111 1095 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 DUOXA2Q1HG44 320 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 FAM183BPQ6ZVS7 135 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 TP53INP2Q8IXH6 220 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 TMEM102Q8N9M5 508 aaPredicted RBP14.65□□□□□ -0.06
SDC1-201ENST00000254351 SGIP1Q9BQI5 828 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 SNRNP25Q9BV90 132 aaKnown RBP14.65□□□□□ -0.06
SDC1-201ENST00000254351 SLC38A7Q9NVC3 462 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 UBP1Q9NZI7 540 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 A8MU76 341 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 KCNK1O00180 336 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 PEX10O60683 326 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 CYP2F1P24903 491 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 CARTPTQ16568 116 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 CYP2A13Q16696 494 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 DGKDQ16760 1214 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 SEL1L3Q68CR1 1132 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 TMEM53Q6P2H8 277 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 Q6ZNX1 250 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 CHERPQ8IWX8 916 aaKnown RBP14.65□□□□□ -0.06
SDC1-201ENST00000254351 PNPLA1Q8N8W4 532 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 GABPB2Q8TAK5 448 aaPredicted RBP14.65□□□□□ -0.06
SDC1-201ENST00000254351 ZNF669Q96BR6 464 aaPredicted RBP14.65□□□□□ -0.06
SDC1-201ENST00000254351 ILKAPQ9H0C8 392 aaPredicted RBP14.65□□□□□ -0.06
SDC1-201ENST00000254351 FUOMA2VDF0 154 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 SOCS2O14508 198 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 NR3C2P08235 984 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 HOXD12P35452 270 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 GNL1P36915 607 aaPredicted RBP14.64□□□□□ -0.07
SDC1-201ENST00000254351 GRIA4P48058 902 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 CLDN10P78369 228 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 GLRA4Q5JXX5 417 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 TMEM174Q8WUU8 243 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 SLC7A3Q8WY07 619 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 PPP1R10Q96QC0 940 aaKnown RBP14.64□□□□□ -0.07
SDC1-201ENST00000254351 RANBP9Q96S59 729 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 JPH1Q9HDC5 661 aaPredicted RBP14.64□□□□□ -0.07
SDC1-201ENST00000254351 PXMP2Q9NR77 195 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 SACM1LQ9NTJ5 587 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 ATP6AP2A0A1C7CYW4 349 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 BTBD19C9JJ37 291 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 ATP6AP2O75787 350 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 HNRNPLP14866 589 aaKnown RBP eCLIP14.64□□□□□ -0.07
SDC1-201ENST00000254351 TSPAN8P19075 237 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 TFEBP19484 476 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 SFNP31947 248 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 OXCT1P55809 520 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 MAP7D1Q3KQU3 841 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 DACT2Q5SW24 774 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 SETD3Q86TU7 594 aaPredicted RBP14.64□□□□□ -0.07
SDC1-201ENST00000254351 CENPSQ8N2Z9 138 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 FIBCD1Q8N539 461 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 DNAAF3Q8N9W5 541 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 DDHD1Q8NEL9 900 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 FBXL20Q96IG2 436 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 GTSE1Q9NYZ3 720 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 EGFL7Q9UHF1 273 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 EFR3BQ9Y2G0 817 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 FOCADQ5VW36 1801 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 RNF103-CHMP3A0A140T963 221 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 H3BNH8 94 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 EEF1B2P24534 225 aaKnown RBP14.64□□□□□ -0.07
SDC1-201ENST00000254351 GSTM4Q03013 218 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 PERM1Q5SV97 790 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 EGFLAMQ63HQ2 1017 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 FSTL4Q6MZW2 842 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 NANOGP8Q6NSW7 305 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 CYP4V2Q6ZWL3 525 aaPredicted RBP14.64□□□□□ -0.07
SDC1-201ENST00000254351 COLGALT1Q8NBJ5 622 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 CATSPER1Q8NEC5 780 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 LPGAT1Q92604 370 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 TRPC7Q9HCX4 862 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 MOCS1Q9NZB8 636 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 AP4E1Q9UPM8 1137 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 PCDHB12Q9Y5F1 795 aa14.64□□□□□ -0.07
SDC1-201ENST00000254351 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.64□□□□□ -0.07
SDC1-201ENST00000254351 B4GAT1O43505 415 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 PSAPP07602 524 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 CXCL8P10145 99 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 GRIA3P42263 894 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 TREML2Q5T2D2 321 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 RNF135Q8IUD6 432 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 OR52K1Q8NGK4 314 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 OR9I1Q8NGQ6 314 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 SLC35B4Q969S0 331 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 SLC45A3Q96JT2 553 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 COX4I2Q96KJ9 171 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 CORO1BQ9BR76 489 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 GPATCH1Q9BRR8 931 aaKnown RBP14.63□□□□□ -0.07
SDC1-201ENST00000254351 ELOVL4Q9GZR5 314 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 EFCAB1Q9HAE3 211 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms