RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 GSDMAQ96QA5 445 aa16.94■□□□□ 0.3
CLN3-264ENST00000637985 TWNKQ96RR1 684 aa16.94■□□□□ 0.3
CLN3-264ENST00000637985 UCKL1Q9NWZ5 548 aa16.94■□□□□ 0.3
CLN3-264ENST00000637985 PCDHGA8Q9Y5G5 932 aa16.94■□□□□ 0.3
CLN3-264ENST00000637985 DOCK9Q9BZ29 2069 aa16.93■□□□□ 0.3
CLN3-264ENST00000637985 GTF2H1P32780 548 aa16.93■□□□□ 0.3
CLN3-264ENST00000637985 ASPAP45381 313 aa16.93■□□□□ 0.3
CLN3-264ENST00000637985 GCLMP48507 274 aa16.93■□□□□ 0.3
CLN3-264ENST00000637985 PPP3CAQ08209 521 aa16.93■□□□□ 0.3
CLN3-264ENST00000637985 PNOCQ13519 176 aa16.93■□□□□ 0.3
CLN3-264ENST00000637985 COBLL1Q53SF7 1204 aa16.93■□□□□ 0.3
CLN3-264ENST00000637985 HS1BP3Q53T59 392 aa16.93■□□□□ 0.3
CLN3-264ENST00000637985 SND1Q7KZF4 910 aaKnown RBP eCLIP16.93■□□□□ 0.32e-7■■■□□ 16
CLN3-264ENST00000637985 RSRC2Q7L4I2 434 aaKnown RBP16.93■□□□□ 0.3
CLN3-264ENST00000637985 TMC6Q7Z403 805 aa16.93■□□□□ 0.3
CLN3-264ENST00000637985 CCDC150Q8NCX0 1101 aa16.93■□□□□ 0.3
CLN3-264ENST00000637985 TTC17Q96AE7 1141 aa16.93■□□□□ 0.3
CLN3-264ENST00000637985 GRAMD1AQ96CP6 724 aa16.93■□□□□ 0.3
CLN3-264ENST00000637985 LMLNQ96KR4 655 aa16.93■□□□□ 0.3
CLN3-264ENST00000637985 CCNL2Q96S94 520 aaPredicted RBP16.93■□□□□ 0.3
CLN3-264ENST00000637985 GTPBP4Q9BZE4 634 aaKnown RBP16.93■□□□□ 0.3
CLN3-264ENST00000637985 ABCG4Q9H172 646 aa16.93■□□□□ 0.3
CLN3-264ENST00000637985 OSBPL2Q9H1P3 480 aa16.93■□□□□ 0.3
CLN3-264ENST00000637985 CYP3A43Q9HB55 503 aa16.93■□□□□ 0.3
CLN3-264ENST00000637985 TMEM8AQ9HCN3 771 aa16.93■□□□□ 0.3
CLN3-264ENST00000637985 COL27A1Q8IZC6 1860 aaPredicted RBP16.93■□□□□ 0.3
CLN3-264ENST00000637985 TBC1D3DA0A087WVF3 549 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 TBC1D3IA0A087WXS9 549 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 TBC1D3EA0A087X179 549 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 TBC1D3KA0A087X1G2 549 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 LY6G6EA0A0G2JKS1 128 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 TBC1D3FA6NER0 549 aaPredicted RBP16.92■□□□□ 0.3
CLN3-264ENST00000637985 TBC1D3LB9A6J9 549 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 CETN3O15182 167 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 SMC2O95347 1197 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 TBC1D3HP0C7X1 549 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 TRIM49P0CI25 452 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 TRIM49CP0CI26 452 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 MYF5P13349 255 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 HARS2P49590 506 aaKnown RBP16.92■□□□□ 0.3
CLN3-264ENST00000637985 SGSHP51688 502 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 ST8SIA6P61647 398 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 INCA1Q0VD86 236 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 ZSCAN23Q3MJ62 389 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 ADGRF1Q5T601 910 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 ZNF658Q5TYW1 1059 aaPredicted RBP16.92■□□□□ 0.3
CLN3-264ENST00000637985 TBC1D3GQ6DHY5 549 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 TBC1D3CQ6IPX1 549 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 SPOPLQ6IQ16 392 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 PRPF39Q86UA1 669 aaKnown RBP16.92■□□□□ 0.3
CLN3-264ENST00000637985 TBC1D3Q8IZP1 549 aaPredicted RBP16.92■□□□□ 0.3
CLN3-264ENST00000637985 ARHGAP18Q8N392 663 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 KDM1BQ8NB78 822 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 TAS1R2Q8TE23 839 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 FAXDC2Q96IV6 333 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 MRGPRX3Q96LB0 322 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 APOLD1Q96LR9 279 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 TIGD1Q96MW7 591 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 FAM129BQ96TA1 746 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 DUSP16Q9BY84 665 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 DNAI2Q9GZS0 605 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 HOOK1Q9UJC3 728 aaKnown RBP16.92■□□□□ 0.3
CLN3-264ENST00000637985 DMTF1Q9Y222 760 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 U3KQA8 63 aa16.92■□□□□ 0.3
CLN3-264ENST00000637985 TDRD6O60522 2096 aaKnown RBP16.92■□□□□ 0.3
CLN3-264ENST00000637985 KIF26BQ2KJY2 2108 aa16.91■□□□□ 0.3
CLN3-264ENST00000637985 TARSL2A2RTX5 802 aaKnown RBP16.91■□□□□ 0.3
CLN3-264ENST00000637985 FFAR2O15552 330 aa16.91■□□□□ 0.3
CLN3-264ENST00000637985 STX10O60499 249 aa16.91■□□□□ 0.3
CLN3-264ENST00000637985 ITGB2P05107 769 aa16.91■□□□□ 0.3
CLN3-264ENST00000637985 EPB41P11171 864 aaKnown RBP16.91■□□□□ 0.3
CLN3-264ENST00000637985 CR2P20023 1033 aa16.91■□□□□ 0.3
CLN3-264ENST00000637985 C5AR1P21730 350 aa16.91■□□□□ 0.3
CLN3-264ENST00000637985 NUDT1P36639 197 aa16.91■□□□□ 0.3
CLN3-264ENST00000637985 STAT4Q14765 748 aa16.91■□□□□ 0.3
CLN3-264ENST00000637985 MPP7Q5T2T1 576 aa16.91■□□□□ 0.3
CLN3-264ENST00000637985 KRT39Q6A163 491 aa16.91■□□□□ 0.3
CLN3-264ENST00000637985 CLEC14AQ86T13 490 aa16.91■□□□□ 0.3
CLN3-264ENST00000637985 SMYD4Q8IYR2 804 aaPredicted RBP16.91■□□□□ 0.3
CLN3-264ENST00000637985 SPATA20Q8TB22 786 aa16.91■□□□□ 0.3
CLN3-264ENST00000637985 ATXN7L3BQ96GX2 97 aa16.91■□□□□ 0.3
CLN3-264ENST00000637985 SEMA3CQ99985 751 aa16.91■□□□□ 0.3
CLN3-264ENST00000637985 NIF3L1Q9GZT8 377 aa16.91■□□□□ 0.3
CLN3-264ENST00000637985 APOBEC3GQ9HC16 384 aaKnown RBP16.91■□□□□ 0.3
CLN3-264ENST00000637985 SEPT3Q9UH03 358 aa16.91■□□□□ 0.3
CLN3-264ENST00000637985 ATXN7L1Q9ULK2 861 aaPredicted RBP16.91■□□□□ 0.3
CLN3-264ENST00000637985 LATS1O95835 1130 aa16.9■□□□□ 0.3
CLN3-264ENST00000637985 ASLP04424 464 aa16.9■□□□□ 0.3
CLN3-264ENST00000637985 PRCPP42785 496 aa16.9■□□□□ 0.3
CLN3-264ENST00000637985 PSMD8P48556 350 aa16.9■□□□□ 0.3
CLN3-264ENST00000637985 YWHAGP61981 247 aaKnown RBP eCLIP16.9■□□□□ 0.3
CLN3-264ENST00000637985 SERINC3Q13530 473 aa16.9■□□□□ 0.3
CLN3-264ENST00000637985 ELOA2Q8IYF1 753 aaPredicted RBP16.9■□□□□ 0.3
CLN3-264ENST00000637985 MAPK15Q8TD08 544 aa16.9■□□□□ 0.3
CLN3-264ENST00000637985 SMARCE1Q969G3 411 aa16.9■□□□□ 0.3
CLN3-264ENST00000637985 FAM131CQ96AQ9 280 aa16.9■□□□□ 0.3
CLN3-264ENST00000637985 TSG101Q99816 390 aa16.9■□□□□ 0.3
CLN3-264ENST00000637985 NT5C1AQ9BXI3 368 aa16.9■□□□□ 0.3
CLN3-264ENST00000637985 MMRN2Q9H8L6 949 aa16.9■□□□□ 0.3
CLN3-264ENST00000637985 USP29Q9HBJ7 922 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms