RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 FAM204AQ9H8W3 233 aa19.01■□□□□ 0.63
CLN3-241ENST00000635861 XPO7Q9UIA9 1087 aaKnown RBP19.01■□□□□ 0.63
CLN3-241ENST00000635861 DOCK9Q9BZ29 2069 aa19.01■□□□□ 0.63
CLN3-241ENST00000635861 ADAMTS20P59510 1910 aa19.01■□□□□ 0.63
CLN3-241ENST00000635861 A0A1W2PP55 124 aa19■□□□□ 0.63
CLN3-241ENST00000635861 BECN2A8MW95 431 aa19■□□□□ 0.63
CLN3-241ENST00000635861 TTC34A8MYJ7 566 aa19■□□□□ 0.63
CLN3-241ENST00000635861 TNFSF14O43557 240 aa19■□□□□ 0.63
CLN3-241ENST00000635861 GOT1P17174 413 aa19■□□□□ 0.63
CLN3-241ENST00000635861 C21orf59P57076 290 aa19■□□□□ 0.63
CLN3-241ENST00000635861 PTK2Q05397 1052 aa19■□□□□ 0.63
CLN3-241ENST00000635861 LRSAM1Q6UWE0 723 aa19■□□□□ 0.63
CLN3-241ENST00000635861 MMS22LQ6ZRQ5 1243 aa19■□□□□ 0.63
CLN3-241ENST00000635861 TMPRSS7Q7RTY8 843 aa19■□□□□ 0.63
CLN3-241ENST00000635861 MMAAQ8IVH4 418 aaKnown RBP19■□□□□ 0.63
CLN3-241ENST00000635861 GALNT15Q8N3T1 639 aa19■□□□□ 0.63
CLN3-241ENST00000635861 PNPLA1Q8N8W4 532 aa19■□□□□ 0.63
CLN3-241ENST00000635861 PTPRN2Q92932 1015 aa19■□□□□ 0.63
CLN3-241ENST00000635861 CRACR2AQ9BSW2 395 aa19■□□□□ 0.63
CLN3-241ENST00000635861 NEUROG2Q9H2A3 272 aa19■□□□□ 0.63
CLN3-241ENST00000635861 KDM4CQ9H3R0 1056 aa19■□□□□ 0.63
CLN3-241ENST00000635861 TOR4AQ9NXH8 423 aa19■□□□□ 0.63
CLN3-241ENST00000635861 CACNA1GO43497 2377 aa19■□□□□ 0.63
CLN3-241ENST00000635861 YKT6O15498 198 aa19■□□□□ 0.63
CLN3-241ENST00000635861 RNASEH2AO75792 299 aaKnown RBP19■□□□□ 0.63
CLN3-241ENST00000635861 SLC9A1P19634 815 aa19■□□□□ 0.63
CLN3-241ENST00000635861 NUDT1P36639 197 aa19■□□□□ 0.63
CLN3-241ENST00000635861 CTSOP43234 321 aaPredicted RBP19■□□□□ 0.63
CLN3-241ENST00000635861 UBE2HP62256 183 aa19■□□□□ 0.63
CLN3-241ENST00000635861 ARHGAP44Q17R89 818 aa19■□□□□ 0.63
CLN3-241ENST00000635861 NCEH1Q6PIU2 408 aa19■□□□□ 0.63
CLN3-241ENST00000635861 C11orf57Q6ZUT1 292 aaPredicted RBP19■□□□□ 0.63
CLN3-241ENST00000635861 DSG4Q86SJ6 1040 aa19■□□□□ 0.63
CLN3-241ENST00000635861 ZDHHC17Q8IUH5 632 aa19■□□□□ 0.63
CLN3-241ENST00000635861 APCDD1Q8J025 514 aa19■□□□□ 0.63
CLN3-241ENST00000635861 DEFB106AQ8N104 65 aa19■□□□□ 0.63
CLN3-241ENST00000635861 FAM131CQ96AQ9 280 aa19■□□□□ 0.63
CLN3-241ENST00000635861 SPAG5Q96R06 1193 aa19■□□□□ 0.63
CLN3-241ENST00000635861 CPXM1Q96SM3 734 aa19■□□□□ 0.63
CLN3-241ENST00000635861 FAM129BQ96TA1 746 aa19■□□□□ 0.63
CLN3-241ENST00000635861 DDIT4Q9NX09 232 aa19■□□□□ 0.63
CLN3-241ENST00000635861 RRN3Q9NYV6 651 aa19■□□□□ 0.63
CLN3-241ENST00000635861 SERGEFQ9UGK8 458 aa19■□□□□ 0.63
CLN3-241ENST00000635861 SLCO3A1Q9UIG8 710 aa19■□□□□ 0.63
CLN3-241ENST00000635861 LAMA5O15230 3695 aa18.99■□□□□ 0.63
CLN3-241ENST00000635861 APC2O95996 2303 aa18.99■□□□□ 0.63
CLN3-241ENST00000635861 A0A1B0GTQ1 180 aa18.99■□□□□ 0.63
CLN3-241ENST00000635861 H0Y8X5 98 aa18.99■□□□□ 0.63
CLN3-241ENST00000635861 SLC7A4O43246 635 aa18.99■□□□□ 0.63
CLN3-241ENST00000635861 MZF1P28698 734 aaPredicted RBP18.99■□□□□ 0.63
CLN3-241ENST00000635861 USP8P40818 1118 aa18.99■□□□□ 0.63
CLN3-241ENST00000635861 SCAPQ12770 1279 aa18.99■□□□□ 0.63
CLN3-241ENST00000635861 SLC45A4Q5BKX6 768 aa18.99■□□□□ 0.63
CLN3-241ENST00000635861 WDTC1Q8N5D0 677 aa18.99■□□□□ 0.63
CLN3-241ENST00000635861 MLKLQ8NB16 471 aa18.99■□□□□ 0.63
CLN3-241ENST00000635861 RNF34Q969K3 372 aa18.99■□□□□ 0.63
CLN3-241ENST00000635861 RPL10LQ96L21 214 aaKnown RBP18.99■□□□□ 0.63
CLN3-241ENST00000635861 ACP6Q9NPH0 428 aa18.99■□□□□ 0.63
CLN3-241ENST00000635861 FAM47DPA6NHR8 397 aa18.98■□□□□ 0.63
CLN3-241ENST00000635861 ALOX15BO15296 676 aa18.98■□□□□ 0.63
CLN3-241ENST00000635861 PON1P27169 355 aa18.98■□□□□ 0.63
CLN3-241ENST00000635861 CD38P28907 300 aa18.98■□□□□ 0.63
CLN3-241ENST00000635861 NOS2P35228 1153 aa18.98■□□□□ 0.63
CLN3-241ENST00000635861 PSMD8P48556 350 aa18.98■□□□□ 0.63
CLN3-241ENST00000635861 ADPRHP54922 357 aa18.98■□□□□ 0.63
CLN3-241ENST00000635861 PITX1P78337 314 aaPredicted RBP18.98■□□□□ 0.63
CLN3-241ENST00000635861 C5orf22Q49AR2 442 aa18.98■□□□□ 0.63
CLN3-241ENST00000635861 ACBD5Q5T8D3 534 aaPredicted RBP18.98■□□□□ 0.63
CLN3-241ENST00000635861 CXorf57Q6NSI4 855 aaKnown RBP18.98■□□□□ 0.63
CLN3-241ENST00000635861 GJB7Q6PEY0 223 aa18.98■□□□□ 0.63
CLN3-241ENST00000635861 SLC26A9Q7LBE3 791 aa18.98■□□□□ 0.63
CLN3-241ENST00000635861 FAM114A1Q8IWE2 563 aa18.98■□□□□ 0.63
CLN3-241ENST00000635861 STK40Q8N2I9 435 aa18.98■□□□□ 0.63
CLN3-241ENST00000635861 AADATQ8N5Z0 425 aa18.98■□□□□ 0.63
CLN3-241ENST00000635861 C1orf131Q8NDD1 294 aaKnown RBP18.98■□□□□ 0.63
CLN3-241ENST00000635861 ZNF397Q8NF99 534 aaPredicted RBP18.98■□□□□ 0.63
CLN3-241ENST00000635861 ELF4Q99607 663 aaPredicted RBP18.98■□□□□ 0.63
CLN3-241ENST00000635861 CCDC86Q9H6F5 360 aaKnown RBP18.98■□□□□ 0.63
CLN3-241ENST00000635861 DKK4Q9UBT3 224 aa18.98■□□□□ 0.63
CLN3-241ENST00000635861 SLC25A13Q9UJS0 675 aa18.98■□□□□ 0.63
CLN3-241ENST00000635861 ARID1BQ8NFD5 2236 aaPredicted RBP18.97■□□□□ 0.63
CLN3-241ENST00000635861 DAB1O75553 588 aa18.97■□□□□ 0.63
CLN3-241ENST00000635861 ATXN1LP0C7T5 689 aaKnown RBP18.97■□□□□ 0.63
CLN3-241ENST00000635861 CDK4P11802 303 aa18.97■□□□□ 0.63
CLN3-241ENST00000635861 PDGFRAP16234 1089 aa18.97■□□□□ 0.63
CLN3-241ENST00000635861 KRT9P35527 623 aa18.97■□□□□ 0.63
CLN3-241ENST00000635861 BPIFB4P59827 614 aa18.97■□□□□ 0.63
CLN3-241ENST00000635861 TAF5Q15542 800 aa18.97■□□□□ 0.63
CLN3-241ENST00000635861 FAM46CQ5VWP2 391 aa18.97■□□□□ 0.63
CLN3-241ENST00000635861 FBXL22Q6P050 247 aa18.97■□□□□ 0.63
CLN3-241ENST00000635861 OLFML1Q6UWY5 402 aa18.97■□□□□ 0.63
CLN3-241ENST00000635861 CREBRFQ8IUR6 639 aa18.97■□□□□ 0.63
CLN3-241ENST00000635861 OXR1Q8N573 874 aa18.97■□□□□ 0.63
CLN3-241ENST00000635861 OR8D1Q8WZ84 308 aa18.97■□□□□ 0.63
CLN3-241ENST00000635861 SLC6A18Q96N87 628 aa18.97■□□□□ 0.63
CLN3-241ENST00000635861 RPRD1AQ96P16 312 aaPredicted RBP18.97■□□□□ 0.63
CLN3-241ENST00000635861 BTBD3Q9Y2F9 522 aa18.97■□□□□ 0.63
CLN3-241ENST00000635861 PAXBP1Q9Y5B6 917 aa18.97■□□□□ 0.63
CLN3-241ENST00000635861 LATO43561 262 aa18.96■□□□□ 0.63
CLN3-241ENST00000635861 ATP9BO43861 1147 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms