RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 FGFR2P21802 821 aa3.24□□□□□ -1.89
SCN1A-208ENST00000625916 DLX5P56178 289 aa3.24□□□□□ -1.89
SCN1A-208ENST00000625916 DDR1Q08345 913 aa3.24□□□□□ -1.89
SCN1A-208ENST00000625916 KIF19Q2TAC6 998 aa3.24□□□□□ -1.89
SCN1A-208ENST00000625916 ARL13AQ5H913 290 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-208ENST00000625916 ANKRD40Q6AI12 368 aa3.24□□□□□ -1.89
SCN1A-208ENST00000625916 ERAP2Q6P179 960 aa3.24□□□□□ -1.89
SCN1A-208ENST00000625916 MSANTD2Q6P1R3 559 aa3.24□□□□□ -1.89
SCN1A-208ENST00000625916 C8orf82Q6P1X6 216 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-208ENST00000625916 Q6ZSV7 163 aa3.24□□□□□ -1.89
SCN1A-208ENST00000625916 IGFN1Q86VF2 1251 aa3.24□□□□□ -1.89
SCN1A-208ENST00000625916 CCDC25Q86WR0 208 aa3.24□□□□□ -1.89
SCN1A-208ENST00000625916 SLC22A17Q8WUG5 538 aa3.24□□□□□ -1.89
SCN1A-208ENST00000625916 ZNF304Q9HCX3 659 aa3.24□□□□□ -1.89
SCN1A-208ENST00000625916 FBXO4Q9UKT5 387 aa3.24□□□□□ -1.89
SCN1A-208ENST00000625916 THRAP3Q9Y2W1 955 aaKnown RBP3.24□□□□□ -1.89
SCN1A-208ENST00000625916 SLC4A4Q9Y6R1 1079 aa3.24□□□□□ -1.89
SCN1A-208ENST00000625916 POM121BA6NF01 834 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 VSTM5A8MXK1 200 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 STMND1H3BQB6 276 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 J3KTA2 159 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 ASAP2O43150 1006 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 IGLV2-11P01706 119 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 SNRNP70P08621 437 aaKnown RBP3.23□□□□□ -1.89
SCN1A-208ENST00000625916 EGR1P18146 543 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 KRTAP5-9P26371 169 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 TNFSF8P32971 234 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 STAT1P42224 750 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 TMPRSS3P57727 454 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 NSUN2Q08J23 767 aaKnown RBP eCLIP3.23□□□□□ -1.89
SCN1A-208ENST00000625916 DUSP6Q16828 381 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 TMEM88Q6PEY1 159 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 DSTYKQ6XUX3 929 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 RASGRP3Q8IV61 690 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 MUC20Q8N307 709 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-208ENST00000625916 DPP10Q8N608 796 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 EXD3Q8N9H8 876 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 KDM1BQ8NB78 822 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 WBP2Q969T9 261 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 IGSF21Q96ID5 467 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 APOLD1Q96LR9 279 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 NODALQ96S42 347 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 FIZ1Q96SL8 496 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 DDX31Q9H8H2 851 aaKnown RBP3.23□□□□□ -1.89
SCN1A-208ENST00000625916 TXNRD2Q9NNW7 524 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 KCNK9Q9NPC2 374 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 KIF26BQ2KJY2 2108 aa3.23□□□□□ -1.89
SCN1A-208ENST00000625916 PNMA6EA0A0J9YXQ4 647 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 GXYLT2A0PJZ3 443 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 KRTAP9-6A8MVA2 160 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 KCNJ18B7U540 433 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 NKX2-8O15522 239 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 KCNJ13O60928 360 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 NDST3O95803 873 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 ITGA5P08648 1049 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 ZNF12P17014 697 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 ITGB8P26012 769 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 CXCR3P49682 368 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 ZNF543Q08ER8 600 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 GBX1Q14549 363 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 NFE2Q16621 373 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-208ENST00000625916 AAGABQ6PD74 315 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 MDGA2Q7Z553 956 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 KLBQ86Z14 1044 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 LRRC57Q8N9N7 239 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 CMASQ8NFW8 434 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-208ENST00000625916 FAM216AQ8WUB2 273 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 PAAF1Q9BRP4 392 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.22□□□□□ -1.89
SCN1A-208ENST00000625916 OCIAD1Q9NX40 245 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 MYO1AQ9UBC5 1043 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 NOTCH3Q9UM47 2321 aa3.22□□□□□ -1.89
SCN1A-208ENST00000625916 GOLGA6CA6NDK9 693 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 GOLGA6BA6NDN3 693 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 PRR23AA6NEV1 266 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 C3orf70A6NLC5 250 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-208ENST00000625916 KPNA5O15131 536 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 PQBP1O60828 265 aaKnown RBP3.21□□□□□ -1.9
SCN1A-208ENST00000625916 TAF5LO75529 589 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 SP1P08047 785 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 F7P08709 466 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-208ENST00000625916 GOLGA6DP0CG33 693 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 PEPDP12955 493 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 KLRC2P26717 231 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 GABRB3P28472 473 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 NUDT6P53370 316 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 TAS2R50P59544 299 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 TLE3Q04726 772 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 HNF4GQ14541 408 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 ZRSR1Q15695 479 aaKnown RBP3.21□□□□□ -1.9
SCN1A-208ENST00000625916 AAK1Q2M2I8 961 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 TCP11L2Q8N4U5 519 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 RFLNBQ8N5W9 214 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 BICD2Q8TD16 824 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 EPYCQ99645 322 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 SPRY4Q9C004 299 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 FSCN3Q9NQT6 498 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 GOLGA6AQ9NYA3 693 aa3.21□□□□□ -1.9
SCN1A-208ENST00000625916 TRBV5-7A0A0A0MS05 114 aa3.2□□□□□ -1.9
SCN1A-208ENST00000625916 MCIDASD6RGH6 385 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms