RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ARMCX1Q9P291 453 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 ZFP69BQ9UJL9 534 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 VANGL2Q9ULK5 521 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 L3MBTL1Q9Y468 752 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 A0A1W2PQH9 124 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 NT5C1B-RDH14C9J2C7 533 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 MGRN1O60291 552 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 TOMM70O94826 608 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 F9P00740 461 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 FAM163BP0C2L3 166 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 MYL2P10916 166 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 RAB27AP51159 221 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 USP46P62068 366 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 SP3Q02447 781 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 PDE1CQ14123 709 aaPredicted RBP10.87□□□□□ -0.67
CUX1-221ENST00000622516 DLG2Q15700 870 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 TEX44Q53QW1 395 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 DCLRE1AQ6PJP8 1040 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 PDZD4Q76G19 769 aaPredicted RBP10.87□□□□□ -0.67
CUX1-221ENST00000622516 SCD5Q86SK9 330 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 C14orf80Q86SX3 495 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 ZNF598Q86UK7 904 aaKnown RBP10.87□□□□□ -0.67
CUX1-221ENST00000622516 ARID3BQ8IVW6 561 aaPredicted RBP10.87□□□□□ -0.67
CUX1-221ENST00000622516 ACVR1CQ8NER5 493 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 CD99L2Q8TCZ2 262 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 LINC01599Q8WXQ3 324 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 ATP2A3Q93084 1043 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 MOCOSQ96EN8 888 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 PGAP3Q96FM1 320 aaPredicted RBP10.87□□□□□ -0.67
CUX1-221ENST00000622516 FCRL2Q96LA5 508 aaPredicted RBP10.87□□□□□ -0.67
CUX1-221ENST00000622516 TET1Q8NFU7 2136 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 UNC80Q8N2C7 3258 aa10.87□□□□□ -0.67
CUX1-221ENST00000622516 LYPLA1O75608 230 aaPredicted RBP10.86□□□□□ -0.67
CUX1-221ENST00000622516 ATP6V1G2O95670 118 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 POLBP06746 335 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 ITGA2BP08514 1039 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 ARFIP2P53365 341 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 RPL10AP62906 217 aaKnown RBP10.86□□□□□ -0.67
CUX1-221ENST00000622516 ZBTB16Q05516 673 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 GLB1LQ6UWU2 654 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 ASRGL1Q7L266 308 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 CCDC91Q7Z6B0 441 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 RPAINQ86UA6 219 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 ALYREFQ86V81 257 aaKnown RBP10.86□□□□□ -0.67
CUX1-221ENST00000622516 PNPLA1Q8N8W4 532 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 UTP4Q969X6 686 aaKnown RBP10.86□□□□□ -0.67
CUX1-221ENST00000622516 E2F7Q96AV8 911 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 SUSD3Q96L08 255 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 GLT1D1Q96MS3 346 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 LBHD1Q9BQE6 289 aaPredicted RBP10.86□□□□□ -0.67
CUX1-221ENST00000622516 NOD2Q9HC29 1040 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 PCDH10Q9P2E7 1040 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 IGSF9Q9P2J2 1179 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 TXNDC16Q9P2K2 825 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 SLC27A5Q9Y2P5 690 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 ALDH1A2O94788 518 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 AP2A1O95782 977 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 CYP11A1P05108 521 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 DLDP09622 509 aaKnown RBP10.86□□□□□ -0.67
CUX1-221ENST00000622516 MLNP12872 115 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 CDK16Q00536 496 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 NIPAL4Q0D2K0 466 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 GALNT2Q10471 571 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 N4BP2L1Q5TBK1 243 aaPredicted RBP10.86□□□□□ -0.67
CUX1-221ENST00000622516 TFAP2DQ7Z6R9 452 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 RNF180Q86T96 592 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 TNS4Q8IZW8 715 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 PCSK9Q8NBP7 692 aaKnown RBP10.86□□□□□ -0.67
CUX1-221ENST00000622516 CDKL2Q92772 493 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 CERS2Q96G23 380 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 ARHGEF3Q9NR81 526 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.86□□□□□ -0.67
CUX1-221ENST00000622516 DCTN3O75935 186 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 STEAP4Q687X5 459 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 CLNKQ7Z7G1 428 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 CHSY1Q86X52 802 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 SLC39A8Q9C0K1 460 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 TBC1D13Q9NVG8 400 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 BFARQ9NZS9 450 aa10.86□□□□□ -0.67
CUX1-221ENST00000622516 TTC24A2A3L6 582 aaPredicted RBP10.85□□□□□ -0.67
CUX1-221ENST00000622516 C2CD2LO14523 706 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 TNFRSF10BO14763 440 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 IRAK2O43187 625 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 HMBSP08397 361 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 NMBRP28336 390 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 TYK2P29597 1187 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 TUBP50607 506 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 POU6F1Q14863 301 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 STRA8Q7Z7C7 330 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 MIB1Q86YT6 1006 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 IPMKQ8NFU5 416 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 PPP1R14CQ8TAE6 165 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 ZSCAN18Q8TBC5 510 aaPredicted RBP10.85□□□□□ -0.67
CUX1-221ENST00000622516 HDAC11Q96DB2 347 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 TEKT5Q96M29 485 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 EIF2B3Q9NR50 452 aaKnown RBP10.85□□□□□ -0.67
CUX1-221ENST00000622516 EMCNQ9ULC0 261 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 ITM2AO43736 263 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 KIF1CO43896 1103 aaKnown RBP10.85□□□□□ -0.67
CUX1-221ENST00000622516 TADA2AO75478 443 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms