RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 MANEALQ5VSG8 457 aa11.31□□□□□ -0.6
SHKBP1-206ENST00000595523 PLEKHA7Q6IQ23 1121 aa11.31□□□□□ -0.6
SHKBP1-206ENST00000595523 FAM72DQ6L9T8 149 aa11.31□□□□□ -0.6
SHKBP1-206ENST00000595523 KIAA1324Q6UXG2 1013 aaKnown RBP11.31□□□□□ -0.6
SHKBP1-206ENST00000595523 FAM72BQ86X60 149 aa11.31□□□□□ -0.6
SHKBP1-206ENST00000595523 CACUL1Q86Y37 369 aa11.31□□□□□ -0.6
SHKBP1-206ENST00000595523 RPL10LQ96L21 214 aaKnown RBP11.31□□□□□ -0.6
SHKBP1-206ENST00000595523 FEM1AQ9BSK4 669 aa11.31□□□□□ -0.6
SHKBP1-206ENST00000595523 ARRDC1-AS1Q9H2J1 176 aa11.31□□□□□ -0.6
SHKBP1-206ENST00000595523 PRDM16Q9HAZ2 1276 aa11.31□□□□□ -0.6
SHKBP1-206ENST00000595523 PRSS16Q9NQE7 514 aa11.31□□□□□ -0.6
SHKBP1-206ENST00000595523 SEMA4GQ9NTN9 838 aa11.31□□□□□ -0.6
SHKBP1-206ENST00000595523 TMEM51Q9NW97 253 aa11.31□□□□□ -0.6
SHKBP1-206ENST00000595523 USP36Q9P275 1121 aaKnown RBP11.31□□□□□ -0.6
SHKBP1-206ENST00000595523 SLCO3A1Q9UIG8 710 aa11.31□□□□□ -0.6
SHKBP1-206ENST00000595523 CYP8B1Q9UNU6 501 aa11.31□□□□□ -0.6
SHKBP1-206ENST00000595523 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 TTC34A8MYJ7 566 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 SYNCRIPO60506 623 aaKnown RBP11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 LRP3O75074 770 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 RTN2O75298 545 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 RHOBTB1O94844 696 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 FTLP02792 175 aaPredicted RBP11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 SRPRAP08240 638 aaKnown RBP11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 PTGER3P43115 390 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 ECT2LQ008S8 904 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 NRG1Q02297 640 aaPredicted RBP11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 ARID5BQ14865 1188 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 ELF2Q15723 593 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 HNRNPA1L2Q32P51 320 aaKnown RBP11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 TDRD12Q587J7 1177 aaKnown RBP11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 PPP1R2P3Q6NXS1 205 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 TFAP2DQ7Z6R9 452 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 METTL3Q86U44 580 aaKnown RBP11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 C11orf74Q86VG3 221 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 TMPRSS6Q8IU80 811 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 CCDC117Q8IWD4 279 aaPredicted RBP11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 TMEFF1Q8IYR6 380 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 ARFGAP1Q8N6T3 406 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 KDM1BQ8NB78 822 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 OR2T3Q8NH03 318 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 NTAN1Q96AB6 310 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 IQCDQ96DY2 449 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 SPACA7Q96KW9 195 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 PSMB7Q99436 277 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 CNPY3Q9BT09 278 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 TRIM7Q9C029 511 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 ISCUQ9H1K1 167 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 SMOC1Q9H4F8 434 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 ARHGAP20Q9P2F6 1191 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 NENFQ9UMX5 172 aa11.3□□□□□ -0.6
SHKBP1-206ENST00000595523 TMEM131Q92545 1883 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 ANKRD36A6QL64 1941 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 NCOR2Q9Y618 2525 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 A0A087X0T9 212 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 A0A0D9SEW6 157 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 BCLAF3A2AJT9 711 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 TMEM191CA6NGB0 347 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 SRGAP2O75044 1071 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 SIN3BO75182 1162 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 ZNF217O75362 1048 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 MOCS3O95396 460 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 IGLV3-19P01714 112 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 SERPING1P05155 500 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 FAM228BP0C875 321 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 VAV1P15498 845 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 HNRNPH3P31942 346 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 MPLP40238 635 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 TPMTP51580 245 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 CREB5Q02930 508 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 SCAPQ12770 1279 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 ZNF177Q13360 481 aaPredicted RBP11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 SF3A2Q15428 464 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 CSRP2Q16527 193 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 C9orf64Q5T6V5 341 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 ACBD5Q5T8D3 534 aaPredicted RBP11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 RNF219Q5W0B1 726 aaPredicted RBP11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 SPECC1LQ69YQ0 1117 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 DCUN1D2Q6PH85 259 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 LRRC31Q6UY01 552 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 ARMCX6Q7L4S7 300 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 SLC41A1Q8IVJ1 513 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 VSTM4Q8IW00 320 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 PYROXD2Q8N2H3 581 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 FRS2Q8WU20 508 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 SIPA1Q96FS4 1042 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 OSBPL2Q9H1P3 480 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 ITM2CQ9NQX7 267 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 NDFIP2Q9NV92 336 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 PARVAQ9NVD7 372 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 PPARGC1AQ9UBK2 798 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 CNOT8Q9UFF9 292 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 OR12D3Q9UGF7 316 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 ADAMTS1Q9UHI8 967 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 USP18Q9UMW8 372 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 LUC7L2Q9Y383 392 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 PCDHGA5Q9Y5G8 931 aa11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-206ENST00000595523 SHROOM3Q8TF72 1996 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms