RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 PDGFRAP16234 1089 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 ITPKAP23677 461 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 IQCB1Q15051 598 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 C2CD6Q53TS8 623 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 DAB2IPQ5VWQ8 1189 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 TCEAL6Q6IPX3 200 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 STRADAQ7RTN6 431 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 SETD3Q86TU7 594 aaPredicted RBP18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 SLC30A5Q8TAD4 765 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 TCEAL3Q969E4 200 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 IGSF8Q969P0 613 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 MYO19Q96H55 970 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 SELENOOQ9BVL4 669 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 SMOC1Q9H4F8 434 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 RETREG1Q9H6L5 497 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 TMEM9BQ9NQ34 198 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 SLC6A14Q9UN76 642 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 NCKAP1Q9Y2A7 1128 aa18.26■□□□□ 0.51
SHKBP1-204ENST00000594862 SDK1Q7Z5N4 2213 aa18.25■□□□□ 0.51
SHKBP1-204ENST00000594862 GOLGA6L19H0YKK7 550 aa18.25■□□□□ 0.51
SHKBP1-204ENST00000594862 SERPINF2P08697 491 aa18.25■□□□□ 0.51
SHKBP1-204ENST00000594862 TFE3P19532 575 aaPredicted RBP18.25■□□□□ 0.51
SHKBP1-204ENST00000594862 RPS14P62263 151 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-204ENST00000594862 KRT83P78385 493 aa18.25■□□□□ 0.51
SHKBP1-204ENST00000594862 C6orf118Q5T5N4 469 aa18.25■□□□□ 0.51
SHKBP1-204ENST00000594862 ZNF783Q6ZMS7 281 aa18.25■□□□□ 0.51
SHKBP1-204ENST00000594862 USP30Q70CQ3 517 aa18.25■□□□□ 0.51
SHKBP1-204ENST00000594862 DSG4Q86SJ6 1040 aa18.25■□□□□ 0.51
SHKBP1-204ENST00000594862 CIR1Q86X95 450 aaPredicted RBP18.25■□□□□ 0.51
SHKBP1-204ENST00000594862 ZNF366Q8N895 744 aa18.25■□□□□ 0.51
SHKBP1-204ENST00000594862 IQCDQ96DY2 449 aa18.25■□□□□ 0.51
SHKBP1-204ENST00000594862 PCDHB18PQ96TA0 734 aa18.25■□□□□ 0.51
SHKBP1-204ENST00000594862 C2orf49Q9BVC5 232 aaPredicted RBP18.25■□□□□ 0.51
SHKBP1-204ENST00000594862 GPR174Q9BXC1 333 aa18.25■□□□□ 0.51
SHKBP1-204ENST00000594862 ADAM33Q9BZ11 813 aa18.25■□□□□ 0.51
SHKBP1-204ENST00000594862 VPS28Q9UK41 221 aa18.25■□□□□ 0.51
SHKBP1-204ENST00000594862 IGLV3-10A0A075B6K4 115 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 C2CD4BA6NLJ0 364 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 DRGXA6NNA5 263 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 TEX33O43247 280 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 CFIP05156 583 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 RHOCP08134 193 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 ATP11AP98196 1134 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 NRG1Q02297 640 aaPredicted RBP18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 GFPT1Q06210 699 aaPredicted RBP18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 PTP4A2Q12974 167 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 ELAVL3Q14576 367 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 ASIC2Q16515 512 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 FIGNQ5HY92 759 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 TRNP1Q6NT89 227 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 DNAJC24Q6P3W2 148 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 MON1BQ7L1V2 547 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 FAM131BQ86XD5 332 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 CACUL1Q86Y37 369 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 SLC41A1Q8IVJ1 513 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 RGL4Q8IZJ4 473 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 APCDD1Q8J025 514 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 EMC1Q8N766 993 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 RXFP2Q8WXD0 754 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 BAP1Q92560 729 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 VCPIP1Q96JH7 1222 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 FEM1AQ9BSK4 669 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 BTBD1Q9H0C5 482 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 MUC3BQ9H195 1237 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 SGK2Q9HBY8 427 aa18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 NYNRINQ9P2P1 1898 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-204ENST00000594862 ATXN2Q99700 1313 aaKnown RBP18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 SIGLEC16A6NMB1 481 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 PATE3B3GLJ2 98 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 E9PAM4 449 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 SIN3BO75182 1162 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 SYPP08247 313 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 TNFAIP3P21580 790 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 GPD1P21695 349 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 MZF1P28698 734 aaPredicted RBP18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 ETFBP38117 255 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 ATXN3P54252 364 aaPredicted RBP18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 SFMBT2Q5VUG0 894 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 C14orf80Q86SX3 495 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 ZNF683Q8IZ20 524 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 DNASE2BQ8WZ79 361 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 CCDC114Q96M63 670 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 ZYG11BQ9C0D3 744 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 PABPC3Q9H361 631 aaKnown RBP18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 CBX8Q9HC52 389 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 CD93Q9NPY3 652 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 RXFP3Q9NSD7 469 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 TMEM74BQ9NUR3 256 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 PPARGC1AQ9UBK2 798 aaKnown RBP18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 FZD4Q9ULV1 537 aa18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 TPX2Q9ULW0 747 aaKnown RBP18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 KMT2BQ9UMN6 2715 aaPredicted RBP18.23■□□□□ 0.51
SHKBP1-204ENST00000594862 LRRC53A6NM62 1247 aa18.22■□□□□ 0.51
SHKBP1-204ENST00000594862 METTL12A8MUP2 240 aa18.22■□□□□ 0.51
SHKBP1-204ENST00000594862 TTC34A8MYJ7 566 aa18.22■□□□□ 0.51
SHKBP1-204ENST00000594862 ALOX15BO15296 676 aa18.22■□□□□ 0.51
SHKBP1-204ENST00000594862 ADH1BP00325 375 aa18.22■□□□□ 0.51
SHKBP1-204ENST00000594862 GGCXP38435 758 aa18.22■□□□□ 0.51
SHKBP1-204ENST00000594862 PRKCIP41743 596 aa18.22■□□□□ 0.51
SHKBP1-204ENST00000594862 CTSOP43234 321 aaPredicted RBP18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms