RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 PDGFBP01127 241 aaPredicted RBP8.8□□□□□ -1
NUP88-211ENST00000575976 EGFP01133 1207 aa8.8□□□□□ -1
NUP88-211ENST00000575976 APODP05090 189 aa8.8□□□□□ -1
NUP88-211ENST00000575976 RHOCP08134 193 aa8.8□□□□□ -1
NUP88-211ENST00000575976 PABPC1P11940 636 aaKnown RBP8.8□□□□□ -1
NUP88-211ENST00000575976 DRD1P21728 446 aa8.8□□□□□ -1
NUP88-211ENST00000575976 MZF1P28698 734 aaPredicted RBP8.8□□□□□ -1
NUP88-211ENST00000575976 OR1E1P30953 314 aa8.8□□□□□ -1
NUP88-211ENST00000575976 CSKP41240 450 aa8.8□□□□□ -1
NUP88-211ENST00000575976 GRIA2P42262 883 aa8.8□□□□□ -1
NUP88-211ENST00000575976 NUMBP49757 651 aa8.8□□□□□ -1
NUP88-211ENST00000575976 PEX5P50542 639 aa8.8□□□□□ -1
NUP88-211ENST00000575976 ZNF135P52742 658 aaPredicted RBP8.8□□□□□ -1
NUP88-211ENST00000575976 GRSF1Q12849 480 aaKnown RBP eCLIP8.8□□□□□ -1
NUP88-211ENST00000575976 DPYSQ14117 519 aa8.8□□□□□ -1
NUP88-211ENST00000575976 UBXN2BQ14CS0 331 aa8.8□□□□□ -1
NUP88-211ENST00000575976 RNF219Q5W0B1 726 aaPredicted RBP8.8□□□□□ -1
NUP88-211ENST00000575976 TMEM215Q68D42 235 aa8.8□□□□□ -1
NUP88-211ENST00000575976 MFSD7Q6UXD7 560 aa8.8□□□□□ -1
NUP88-211ENST00000575976 ANKS1BQ7Z6G8 1248 aa8.8□□□□□ -1
NUP88-211ENST00000575976 KIAA0907Q7Z7F0 614 aaPredicted RBP8.8□□□□□ -1
NUP88-211ENST00000575976 SETD3Q86TU7 594 aaPredicted RBP8.8□□□□□ -1
NUP88-211ENST00000575976 MAP7D3Q8IWC1 876 aa8.8□□□□□ -1
NUP88-211ENST00000575976 KATNAL2Q8IYT4 538 aa8.8□□□□□ -1
NUP88-211ENST00000575976 APCDD1Q8J025 514 aa8.8□□□□□ -1
NUP88-211ENST00000575976 ZNF687Q8N1G0 1237 aa8.8□□□□□ -1
NUP88-211ENST00000575976 C17orf53Q8N3J3 647 aaPredicted RBP8.8□□□□□ -1
NUP88-211ENST00000575976 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.8□□□□□ -1
NUP88-211ENST00000575976 ZNF557Q8N988 423 aaPredicted RBP8.8□□□□□ -1
NUP88-211ENST00000575976 TERB1Q8NA31 727 aa8.8□□□□□ -1
NUP88-211ENST00000575976 PRSS33Q8NF86 280 aa8.8□□□□□ -1
NUP88-211ENST00000575976 TRIM58Q8NG06 486 aa8.8□□□□□ -1
NUP88-211ENST00000575976 PCDH19Q8TAB3 1148 aa8.8□□□□□ -1
NUP88-211ENST00000575976 EXOC4Q96A65 974 aa8.8□□□□□ -1
NUP88-211ENST00000575976 ALG14Q96F25 216 aa8.8□□□□□ -1
NUP88-211ENST00000575976 ALS2CR12Q96Q35 445 aa8.8□□□□□ -1
NUP88-211ENST00000575976 ZNF670Q9BS34 389 aa8.8□□□□□ -1
NUP88-211ENST00000575976 FOXQ1Q9C009 403 aa8.8□□□□□ -1
NUP88-211ENST00000575976 RETREG1Q9H6L5 497 aa8.8□□□□□ -1
NUP88-211ENST00000575976 TBC1D17Q9HA65 648 aa8.8□□□□□ -1
NUP88-211ENST00000575976 RBM12Q9NTZ6 932 aaKnown RBP8.8□□□□□ -1
NUP88-211ENST00000575976 ETNK2Q9NVF9 386 aa8.8□□□□□ -1
NUP88-211ENST00000575976 RCOR3Q9P2K3 495 aaPredicted RBP8.8□□□□□ -1
NUP88-211ENST00000575976 GGA2Q9UJY4 613 aa8.8□□□□□ -1
NUP88-211ENST00000575976 INTS6Q9UL03 887 aaKnown RBP8.8□□□□□ -1
NUP88-211ENST00000575976 TBC1D30Q9Y2I9 924 aa8.8□□□□□ -1
NUP88-211ENST00000575976 MRPS17Q9Y2R5 130 aaKnown RBP8.8□□□□□ -1
NUP88-211ENST00000575976 MTF2Q9Y483 593 aaPredicted RBP8.8□□□□□ -1
NUP88-211ENST00000575976 MFHAS1Q9Y4C4 1052 aa8.8□□□□□ -1
NUP88-211ENST00000575976 CACNA1BQ00975 2339 aa8.8□□□□□ -1
NUP88-211ENST00000575976 A0A0D9SEW6 157 aa8.79□□□□□ -1
NUP88-211ENST00000575976 ILVBLA1L0T0 632 aa8.79□□□□□ -1
NUP88-211ENST00000575976 GOLGA6L9A6NEM1 432 aa8.79□□□□□ -1
NUP88-211ENST00000575976 TMEM221A6NGB7 291 aa8.79□□□□□ -1
NUP88-211ENST00000575976 FAM170BA6NMN3 283 aa8.79□□□□□ -1
NUP88-211ENST00000575976 MIF4GDA9UHW6 222 aaKnown RBP8.79□□□□□ -1
NUP88-211ENST00000575976 K7EQS6 105 aa8.79□□□□□ -1
NUP88-211ENST00000575976 M0R296 226 aa8.79□□□□□ -1
NUP88-211ENST00000575976 DCLK1O15075 740 aa8.79□□□□□ -1
NUP88-211ENST00000575976 FGF10O15520 208 aaPredicted RBP8.79□□□□□ -1
NUP88-211ENST00000575976 ZRANB2O95218 330 aaKnown RBP eCLIP8.79□□□□□ -1
NUP88-211ENST00000575976 CHRNB1P11230 501 aa8.79□□□□□ -1
NUP88-211ENST00000575976 ACVRL1P37023 503 aa8.79□□□□□ -1
NUP88-211ENST00000575976 MAPKAPK2P49137 400 aa8.79□□□□□ -1
NUP88-211ENST00000575976 DNA2P51530 1060 aa8.79□□□□□ -1
NUP88-211ENST00000575976 OXCT1P55809 520 aa8.79□□□□□ -1
NUP88-211ENST00000575976 RWDD2BP57060 319 aa8.79□□□□□ -1
NUP88-211ENST00000575976 FZD5Q13467 585 aa8.79□□□□□ -1
NUP88-211ENST00000575976 SLC12A1Q13621 1099 aa8.79□□□□□ -1
NUP88-211ENST00000575976 LLGL1Q15334 1064 aa8.79□□□□□ -1
NUP88-211ENST00000575976 FUT11Q495W5 492 aa8.79□□□□□ -1
NUP88-211ENST00000575976 PREPLQ4J6C6 727 aaPredicted RBP8.79□□□□□ -1
NUP88-211ENST00000575976 ODF2Q5BJF6 829 aa8.79□□□□□ -1
NUP88-211ENST00000575976 ANKRD20A8PQ5CZ79 823 aa8.79□□□□□ -1
NUP88-211ENST00000575976 PITRM1Q5JRX3 1037 aa8.79□□□□□ -1
NUP88-211ENST00000575976 ZNF569Q5MCW4 686 aa8.79□□□□□ -1
NUP88-211ENST00000575976 C6orf118Q5T5N4 469 aa8.79□□□□□ -1
NUP88-211ENST00000575976 MEI1Q5TIA1 1274 aa8.79□□□□□ -1
NUP88-211ENST00000575976 EMC10Q5UCC4 262 aa8.79□□□□□ -1
NUP88-211ENST00000575976 SPOCD1Q6ZMY3 1216 aa8.79□□□□□ -1
NUP88-211ENST00000575976 ADIPOR2Q86V24 386 aa8.79□□□□□ -1
NUP88-211ENST00000575976 RCOR2Q8IZ40 523 aa8.79□□□□□ -1
NUP88-211ENST00000575976 AHI1Q8N157 1196 aa8.79□□□□□ -1
NUP88-211ENST00000575976 SLC35F6Q8N357 371 aa8.79□□□□□ -1
NUP88-211ENST00000575976 NETO2Q8NC67 525 aa8.79□□□□□ -1
NUP88-211ENST00000575976 FLCNQ8NFG4 579 aa8.79□□□□□ -1
NUP88-211ENST00000575976 OR7D4Q8NG98 312 aa8.79□□□□□ -1
NUP88-211ENST00000575976 EXD1Q8NHP7 514 aa8.79□□□□□ -1
NUP88-211ENST00000575976 WFIKKN2Q8TEU8 576 aa8.79□□□□□ -1
NUP88-211ENST00000575976 ALG3Q92685 438 aa8.79□□□□□ -1
NUP88-211ENST00000575976 ATOH1Q92858 354 aaPredicted RBP8.79□□□□□ -1
NUP88-211ENST00000575976 FAF2Q96CS3 445 aa8.79□□□□□ -1
NUP88-211ENST00000575976 TRIM44Q96DX7 344 aaPredicted RBP8.79□□□□□ -1
NUP88-211ENST00000575976 HES6Q96HZ4 224 aa8.79□□□□□ -1
NUP88-211ENST00000575976 RNF157Q96PX1 679 aa8.79□□□□□ -1
NUP88-211ENST00000575976 NELL2Q99435 816 aa8.79□□□□□ -1
NUP88-211ENST00000575976 KLC2Q9H0B6 622 aa8.79□□□□□ -1
NUP88-211ENST00000575976 MFSD1Q9H3U5 465 aa8.79□□□□□ -1
NUP88-211ENST00000575976 NOL6Q9H6R4 1146 aaKnown RBP8.79□□□□□ -1
NUP88-211ENST00000575976 LMAN1LQ9HAT1 526 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms