RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 YBEYP58557 167 aaPredicted RBP14.04□□□□□ -0.16
CCDC40-209ENST00000573474 GPS1Q13098 491 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 CALCOCO2Q13137 446 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 HLTFQ14527 1009 aaKnown RBP eCLIP14.04□□□□□ -0.16
CCDC40-209ENST00000573474 P3H1Q32P28 736 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 MAP9Q49MG5 647 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 PRUNE1Q86TP1 453 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 CIR1Q86X95 450 aaPredicted RBP14.04□□□□□ -0.16
CCDC40-209ENST00000573474 CFAP52Q8N1V2 620 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 CPXM2Q8N436 756 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 HJURPQ8NCD3 748 aaPredicted RBP14.04□□□□□ -0.16
CCDC40-209ENST00000573474 TTC16Q8NEE8 873 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 LRRN4Q8WUT4 740 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 HNRNPLLQ8WVV9 542 aaKnown RBP14.04□□□□□ -0.16
CCDC40-209ENST00000573474 ING5Q8WYH8 240 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 TMA16Q96EY4 203 aaKnown RBP14.04□□□□□ -0.16
CCDC40-209ENST00000573474 P2RY11Q96G91 374 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 PRICKLE1Q96MT3 831 aaPredicted RBP14.04□□□□□ -0.16
CCDC40-209ENST00000573474 SLC39A8Q9C0K1 460 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 TTYH1Q9H313 450 aaPredicted RBP14.04□□□□□ -0.16
CCDC40-209ENST00000573474 NOL6Q9H6R4 1146 aaKnown RBP14.04□□□□□ -0.16
CCDC40-209ENST00000573474 GRHL1Q9NZI5 618 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 PAK5Q9P286 719 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 NFU1Q9UMS0 254 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 CCL26Q9Y258 94 aa14.04□□□□□ -0.16
CCDC40-209ENST00000573474 NOTCH4Q99466 2003 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.03□□□□□ -0.16
CCDC40-209ENST00000573474 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.03□□□□□ -0.16
CCDC40-209ENST00000573474 A0A1B0GVM2 712 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 TYW5A2RUC4 315 aaKnown RBP14.03□□□□□ -0.16
CCDC40-209ENST00000573474 TCAF2A6NFQ2 919 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 ARHGAP42A6NI28 874 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 RAMP2O60895 175 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 SEC31AO94979 1220 aaKnown RBP14.03□□□□□ -0.16
CCDC40-209ENST00000573474 MYBL2P10244 700 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 VAV1P15498 845 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 CCNCP24863 283 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 PAPOLAP51003 745 aaKnown RBP14.03□□□□□ -0.16
CCDC40-209ENST00000573474 RPS24P62847 133 aaKnown RBP14.03□□□□□ -0.16
CCDC40-209ENST00000573474 CAV1Q03135 178 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 ZNF177Q13360 481 aaPredicted RBP14.03□□□□□ -0.16
CCDC40-209ENST00000573474 CBX2Q14781 532 aaPredicted RBP14.03□□□□□ -0.16
CCDC40-209ENST00000573474 GRIN2CQ14957 1233 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 PARP15Q460N3 678 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 FBXO38Q6PIJ6 1188 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 ARID3BQ8IVW6 561 aaPredicted RBP14.03□□□□□ -0.16
CCDC40-209ENST00000573474 BBS7Q8IWZ6 715 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 CCDC13Q8IYE1 715 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 ATPAF2Q8N5M1 289 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 ART4Q93070 314 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 APOL5Q9BWW9 433 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 ADAM7Q9H2U9 754 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 KIF9Q9HAQ2 790 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 TPX2Q9ULW0 747 aaKnown RBP14.03□□□□□ -0.16
CCDC40-209ENST00000573474 MTCH2Q9Y6C9 303 aa14.03□□□□□ -0.16
CCDC40-209ENST00000573474 RASA4BC9J798 803 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 DNALI1O14645 258 aaPredicted RBP14.02□□□□□ -0.17
CCDC40-209ENST00000573474 SCAMP3O14828 347 aaKnown RBP14.02□□□□□ -0.17
CCDC40-209ENST00000573474 RASA4O43374 803 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 TBL1XO60907 577 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 PRAMEF12O95522 483 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 SGSHP51688 502 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 PLTPP55058 493 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 USP4Q13107 963 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 POLD3Q15054 466 aaPredicted RBP14.02□□□□□ -0.17
CCDC40-209ENST00000573474 ZNF77Q15935 545 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 CTC1Q2NKJ3 1217 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 ATAT1Q5SQI0 421 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 C6orf118Q5T5N4 469 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 IZUMO3Q5VZ72 239 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 TIGD7Q6NT04 549 aaPredicted RBP14.02□□□□□ -0.17
CCDC40-209ENST00000573474 CES5AQ6NT32 575 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 POTEHQ6S545 545 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 ZDHHC24Q6UX98 284 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 PCGF5Q86SE9 256 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 SETD3Q86TU7 594 aaPredicted RBP14.02□□□□□ -0.17
CCDC40-209ENST00000573474 CELF5Q8N6W0 485 aaKnown RBP14.02□□□□□ -0.17
CCDC40-209ENST00000573474 KIAA1958Q8N8K9 716 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 TDRD5Q8NAT2 981 aaKnown RBP14.02□□□□□ -0.17
CCDC40-209ENST00000573474 ZSCAN18Q8TBC5 510 aaPredicted RBP14.02□□□□□ -0.17
CCDC40-209ENST00000573474 AENQ8WTP8 325 aaKnown RBP14.02□□□□□ -0.17
CCDC40-209ENST00000573474 MAGEH1Q9H213 219 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 ARFGAP3Q9NP61 516 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 ZDHHC18Q9NUE0 388 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 GDE1Q9NZC3 331 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 SEPT10Q9P0V9 454 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 CLEC1BQ9P126 229 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 TBC1D14Q9P2M4 693 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 ANAPC5Q9UJX4 755 aa14.02□□□□□ -0.17
CCDC40-209ENST00000573474 A0A0A0MRY4 1105 aa14.01□□□□□ -0.17
CCDC40-209ENST00000573474 ILVBLA1L0T0 632 aa14.01□□□□□ -0.17
CCDC40-209ENST00000573474 RNF103O00237 685 aa14.01□□□□□ -0.17
CCDC40-209ENST00000573474 SLC9A3R1O14745 358 aaPredicted RBP14.01□□□□□ -0.17
CCDC40-209ENST00000573474 MATN3O15232 486 aa14.01□□□□□ -0.17
CCDC40-209ENST00000573474 MAFKO60675 156 aa14.01□□□□□ -0.17
CCDC40-209ENST00000573474 OPHN1O60890 802 aa14.01□□□□□ -0.17
CCDC40-209ENST00000573474 ECHS1P30084 290 aa14.01□□□□□ -0.17
CCDC40-209ENST00000573474 CLCN6P51797 869 aa14.01□□□□□ -0.17
CCDC40-209ENST00000573474 ITGA8P53708 1063 aa14.01□□□□□ -0.17
CCDC40-209ENST00000573474 NRLP54845 237 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms