RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SLC35F6Q8N357 371 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 TXLNBQ8N3L3 684 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 TERB1Q8NA31 727 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 EXD1Q8NHP7 514 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 ZNF419Q96HQ0 510 aaPredicted RBP9.55□□□□□ -0.88
VPS35-211ENST00000569950 MRGPRX3Q96LB0 322 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 RNF157Q96PX1 679 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 EPAS1Q99814 870 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 DDX50Q9BQ39 737 aaKnown RBP9.55□□□□□ -0.88
VPS35-211ENST00000569950 ZNF670Q9BS34 389 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 FEM1AQ9BSK4 669 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 FOXQ1Q9C009 403 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 EPHX3Q9H6B9 360 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 C8orf33Q9H7E9 229 aaPredicted RBP9.55□□□□□ -0.88
VPS35-211ENST00000569950 CD248Q9HCU0 757 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 ABCB8Q9NUT2 735 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 DNAJC17Q9NVM6 304 aaKnown RBP9.55□□□□□ -0.88
VPS35-211ENST00000569950 C2orf42Q9NWW7 574 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 DLGAP2Q9P1A6 1054 aa9.55□□□□□ -0.88
VPS35-211ENST00000569950 RCOR3Q9P2K3 495 aaPredicted RBP9.55□□□□□ -0.88
VPS35-211ENST00000569950 ANKRD36A6QL64 1941 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 TCRBV7S2A1N4TA0A589 114 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 CCDC66A2RUB6 948 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 LRRD1A4D1F6 860 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 NRDCO43847 1150 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 MFSD11O43934 449 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 KAT7O95251 611 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 PEX11BO96011 259 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 EGFP01133 1207 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 KRT1P04264 644 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 ATP1A1P05023 1023 aaKnown RBP9.54□□□□□ -0.88
VPS35-211ENST00000569950 CHRNB1P11230 501 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 KRT10P13645 584 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 TNNT1P13805 278 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 GLDCP23378 1020 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 EPHB2P29323 1055 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 ACVRL1P37023 503 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 CSKP41240 450 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 CTSOP43234 321 aaPredicted RBP9.54□□□□□ -0.88
VPS35-211ENST00000569950 MAPKAPK2P49137 400 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 NUMBP49757 651 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 ZNF135P52742 658 aaPredicted RBP9.54□□□□□ -0.88
VPS35-211ENST00000569950 TPI1P60174 286 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 SIGLEC14Q08ET2 396 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 KLF1Q13351 362 aaPredicted RBP9.54□□□□□ -0.88
VPS35-211ENST00000569950 ENPP2Q13822 863 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 PAFAH1B3Q15102 231 aaKnown RBP9.54□□□□□ -0.88
VPS35-211ENST00000569950 IFI16Q16666 785 aaKnown RBP9.54□□□□□ -0.88
VPS35-211ENST00000569950 HADHQ16836 314 aaKnown RBP9.54□□□□□ -0.88
VPS35-211ENST00000569950 PLEKHG6Q3KR16 790 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 EMC10Q5UCC4 262 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 ARHGAP36Q6ZRI8 547 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 PEX26Q7Z412 305 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 SETD3Q86TU7 594 aaPredicted RBP9.54□□□□□ -0.88
VPS35-211ENST00000569950 MFN1Q8IWA4 741 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 CCDC105Q8IYK2 499 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 CARNMT1Q8N4J0 409 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 TRIM58Q8NG06 486 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 OR7D4Q8NG98 312 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 CSGALNACT1Q8TDX6 532 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 ARHGEF2Q92974 986 aaKnown RBP9.54□□□□□ -0.88
VPS35-211ENST00000569950 TTC17Q96AE7 1141 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 RNF25Q96BH1 459 aaPredicted RBP9.54□□□□□ -0.88
VPS35-211ENST00000569950 PNKPQ96T60 521 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 P2RY13Q9BPV8 354 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 ACE2Q9BYF1 805 aaPredicted RBP9.54□□□□□ -0.88
VPS35-211ENST00000569950 SLC39A8Q9C0K1 460 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 RETREG1Q9H6L5 497 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 TBC1D17Q9HA65 648 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 LTB4R2Q9NPC1 389 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 RBM12Q9NTZ6 932 aaKnown RBP9.54□□□□□ -0.88
VPS35-211ENST00000569950 GGA2Q9UJY4 613 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 AMFRQ9UKV5 643 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 ACTL7AQ9Y615 435 aa9.54□□□□□ -0.88
VPS35-211ENST00000569950 ILVBLA1L0T0 632 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 MIF4GDA9UHW6 222 aaKnown RBP9.53□□□□□ -0.88
VPS35-211ENST00000569950 H3BRJ5 948 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 ENC1O14682 589 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 FGF10O15520 208 aaPredicted RBP9.53□□□□□ -0.88
VPS35-211ENST00000569950 PI15O43692 258 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 SNAP91O60641 907 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 ZNF821O75541 412 aaPredicted RBP9.53□□□□□ -0.88
VPS35-211ENST00000569950 CYBBP04839 570 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 PABPC1P11940 636 aaKnown RBP9.53□□□□□ -0.88
VPS35-211ENST00000569950 HNRNPLP14866 589 aaKnown RBP eCLIP9.53□□□□□ -0.88
VPS35-211ENST00000569950 PECAM1P16284 738 aaPredicted RBP9.53□□□□□ -0.88
VPS35-211ENST00000569950 SSR1P43307 286 aaKnown RBP9.53□□□□□ -0.88
VPS35-211ENST00000569950 DGKGP49619 791 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 NAP1L1P55209 391 aaKnown RBP9.53□□□□□ -0.88
VPS35-211ENST00000569950 ARF5P84085 180 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 AMPD2Q01433 879 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 GNA12Q03113 381 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 GBE1Q04446 702 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 NR1H3Q13133 447 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 ZNF211Q13398 564 aaPredicted RBP9.53□□□□□ -0.88
VPS35-211ENST00000569950 LLGL1Q15334 1064 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 SIX1Q15475 284 aaPredicted RBP9.53□□□□□ -0.88
VPS35-211ENST00000569950 PPP2R5EQ16537 467 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 PITRM1Q5JRX3 1037 aa9.53□□□□□ -0.88
VPS35-211ENST00000569950 ZNF569Q5MCW4 686 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms