RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 C1orf74Q96LT6 269 aa13.42□□□□□ -0.26
CNOT1-220ENST00000569916 HAPLN3Q96S86 360 aa13.42□□□□□ -0.26
CNOT1-220ENST00000569916 EDEM3Q9BZQ6 932 aa13.42□□□□□ -0.26
CNOT1-220ENST00000569916 MTG2Q9H4K7 406 aa13.42□□□□□ -0.26
CNOT1-220ENST00000569916 FBRSQ9HAH7 460 aa13.42□□□□□ -0.26
CNOT1-220ENST00000569916 TAS2R14Q9NYV8 317 aa13.42□□□□□ -0.26
CNOT1-220ENST00000569916 TBC1D30Q9Y2I9 924 aa13.42□□□□□ -0.26
CNOT1-220ENST00000569916 OR51B4Q9Y5P0 310 aa13.42□□□□□ -0.26
CNOT1-220ENST00000569916 PCDH15Q96QU1 1955 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 ATXN2Q99700 1313 aaKnown RBP13.41□□□□□ -0.26
CNOT1-220ENST00000569916 ADAMTS9Q9P2N4 1935 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.41□□□□□ -0.26
CNOT1-220ENST00000569916 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.41□□□□□ -0.26
CNOT1-220ENST00000569916 SIGLEC16A6NMB1 481 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 DRGXA6NNA5 263 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 TTC34A8MYJ7 566 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 PATE3B3GLJ2 98 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 E9PAM4 449 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 SIN3BO75182 1162 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 TNFAIP3P21580 790 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 GPD1P21695 349 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 ITPKAP23677 461 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 CD6P30203 668 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 STK19P49842 368 aaPredicted RBP13.41□□□□□ -0.26
CNOT1-220ENST00000569916 HDAC4P56524 1084 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 UBASH3AP57075 661 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 ZNF33AQ06730 810 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 ZNF177Q13360 481 aaPredicted RBP13.41□□□□□ -0.26
CNOT1-220ENST00000569916 PUM1Q14671 1186 aaKnown RBP eCLIP13.41□□□□□ -0.26
CNOT1-220ENST00000569916 AASDHQ4L235 1098 aaPredicted RBP13.41□□□□□ -0.26
CNOT1-220ENST00000569916 PPP1R15BQ5SWA1 713 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 ACBD5Q5T8D3 534 aaPredicted RBP13.41□□□□□ -0.26
CNOT1-220ENST00000569916 PEAR1Q5VY43 1037 aaPredicted RBP13.41□□□□□ -0.26
CNOT1-220ENST00000569916 DNAJC24Q6P3W2 148 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 WDR59Q6PJI9 974 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 ZNF571Q7Z3V5 609 aaPredicted RBP13.41□□□□□ -0.26
CNOT1-220ENST00000569916 SLC41A1Q8IVJ1 513 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 MCOLN2Q8IZK6 566 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 PIGKQ92643 395 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 CENPIQ92674 756 aaPredicted RBP13.41□□□□□ -0.26
CNOT1-220ENST00000569916 RPL10LQ96L21 214 aaKnown RBP13.41□□□□□ -0.26
CNOT1-220ENST00000569916 HAUS4Q9H6D7 363 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 TMEM74BQ9NUR3 256 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 WSB2Q9NYS7 404 aaPredicted RBP13.41□□□□□ -0.26
CNOT1-220ENST00000569916 SUN2Q9UH99 717 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 SLCO3A1Q9UIG8 710 aa13.41□□□□□ -0.26
CNOT1-220ENST00000569916 CDV3Q9UKY7 258 aaKnown RBP13.41□□□□□ -0.26
CNOT1-220ENST00000569916 DNAH14Q0VDD8 3507 aa13.4□□□□□ -0.26
CNOT1-220ENST00000569916 A0A1W2PQJ5 194 aa13.4□□□□□ -0.26
CNOT1-220ENST00000569916 ACADMP11310 421 aa13.4□□□□□ -0.26
CNOT1-220ENST00000569916 SDHBP21912 280 aa13.4□□□□□ -0.26
CNOT1-220ENST00000569916 RRM1P23921 792 aa13.4□□□□□ -0.26
CNOT1-220ENST00000569916 RPS14P62263 151 aaKnown RBP13.4□□□□□ -0.26
CNOT1-220ENST00000569916 RPL7AP62424 266 aaKnown RBP13.4□□□□□ -0.26
CNOT1-220ENST00000569916 SULT2A1Q06520 285 aa13.4□□□□□ -0.26
CNOT1-220ENST00000569916 RNF219Q5W0B1 726 aaPredicted RBP13.4□□□□□ -0.26
CNOT1-220ENST00000569916 ZNF776Q68DI1 518 aaPredicted RBP13.4□□□□□ -0.26
CNOT1-220ENST00000569916 LRRC31Q6UY01 552 aa13.4□□□□□ -0.26
CNOT1-220ENST00000569916 SYT12Q8IV01 421 aa13.4□□□□□ -0.26
CNOT1-220ENST00000569916 CCDC185Q8N715 623 aa13.4□□□□□ -0.26
CNOT1-220ENST00000569916 FAM172AQ8WUF8 416 aa13.4□□□□□ -0.26
CNOT1-220ENST00000569916 TOE1Q96GM8 510 aaKnown RBP13.4□□□□□ -0.26
CNOT1-220ENST00000569916 ZNF419Q96HQ0 510 aaPredicted RBP13.4□□□□□ -0.26
CNOT1-220ENST00000569916 HSPA12BQ96MM6 686 aa13.4□□□□□ -0.26
CNOT1-220ENST00000569916 MCEEQ96PE7 176 aa13.4□□□□□ -0.26
CNOT1-220ENST00000569916 FEM1AQ9BSK4 669 aa13.4□□□□□ -0.26
CNOT1-220ENST00000569916 RSPH9Q9H1X1 276 aaPredicted RBP13.4□□□□□ -0.26
CNOT1-220ENST00000569916 MPP6Q9NZW5 540 aa13.4□□□□□ -0.26
CNOT1-220ENST00000569916 ZNF212Q9UDV6 495 aa13.4□□□□□ -0.26
CNOT1-220ENST00000569916 PILRBQ9UKJ0 227 aa13.4□□□□□ -0.26
CNOT1-220ENST00000569916 PI4KAP42356 2102 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 EDDM13A0A1B0GTR0 161 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 LNP1A1A4G5 178 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 TARSL2A2RTX5 802 aaKnown RBP13.39□□□□□ -0.27
CNOT1-220ENST00000569916 TMCO5BA8MYB1 307 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 DDX3XO00571 662 aaKnown RBP eCLIP13.39□□□□□ -0.272e-59■□□□□ 10.7
CNOT1-220ENST00000569916 SLC30A4O14863 429 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 CCP110O43303 1012 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 SRGAP2O75044 1071 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 NDUFS2O75306 463 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 RHOCP08134 193 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 OXTRP30559 389 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 ADRA1BP35368 520 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 HOXD12P35452 270 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 DPP6P42658 865 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 VASPP50552 380 aaPredicted RBP13.39□□□□□ -0.27
CNOT1-220ENST00000569916 ZNF143P52747 638 aaPredicted RBP13.39□□□□□ -0.27
CNOT1-220ENST00000569916 LIMK1P53667 647 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 NRG1Q02297 640 aaPredicted RBP13.39□□□□□ -0.27
CNOT1-220ENST00000569916 ZBTB16Q05516 673 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 KLHL30Q0D2K2 578 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 C9orf64Q5T6V5 341 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 MANEALQ5VSG8 457 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 PPP1R2P3Q6NXS1 205 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 TFAP2DQ7Z6R9 452 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 SETD3Q86TU7 594 aaPredicted RBP13.39□□□□□ -0.27
CNOT1-220ENST00000569916 DNAAF5Q86Y56 855 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 PTPRN2Q92932 1015 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 VCPIP1Q96JH7 1222 aa13.39□□□□□ -0.27
CNOT1-220ENST00000569916 PPP1R9BQ96SB3 815 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms