RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 ITM2CQ9NQX7 267 aa13.79□□□□□ -0.2
CLK3-216ENST00000564468 VPS45Q9NRW7 570 aa13.79□□□□□ -0.2
CLK3-216ENST00000564468 SEMA4GQ9NTN9 838 aa13.79□□□□□ -0.2
CLK3-216ENST00000564468 PARVAQ9NVD7 372 aa13.79□□□□□ -0.2
CLK3-216ENST00000564468 INTS6Q9UL03 887 aaKnown RBP13.79□□□□□ -0.2
CLK3-216ENST00000564468 ERVW-1Q9UQF0 538 aa13.79□□□□□ -0.2
CLK3-216ENST00000564468 TBC1D30Q9Y2I9 924 aa13.79□□□□□ -0.2
CLK3-216ENST00000564468 CHD5Q8TDI0 1954 aa13.79□□□□□ -0.2
CLK3-216ENST00000564468 ITIH6Q6UXX5 1313 aa13.79□□□□□ -0.2
CLK3-216ENST00000564468 MAP1BP46821 2468 aaKnown RBP13.78□□□□□ -0.2
CLK3-216ENST00000564468 IGLV3-10A0A075B6K4 115 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 BCLAF3A2AJT9 711 aaKnown RBP13.78□□□□□ -0.2
CLK3-216ENST00000564468 TARSL2A2RTX5 802 aaKnown RBP13.78□□□□□ -0.2
CLK3-216ENST00000564468 TMCO5BA8MYB1 307 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 E9PAM4 449 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 RNASEH1O60930 286 aaKnown RBP13.78□□□□□ -0.2
CLK3-216ENST00000564468 RTN2O75298 545 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 NDUFS2O75306 463 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 SERPING1P05155 500 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 TPM1P09493 284 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 ZNF806P0C7X5 589 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 HLA-EP13747 358 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 BCKDHBP21953 392 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 ADRA1BP35368 520 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 DHPSP49366 369 aaPredicted RBP13.78□□□□□ -0.2
CLK3-216ENST00000564468 VASPP50552 380 aaPredicted RBP13.78□□□□□ -0.2
CLK3-216ENST00000564468 ZNF143P52747 638 aaPredicted RBP13.78□□□□□ -0.2
CLK3-216ENST00000564468 NRG1Q02297 640 aaPredicted RBP13.78□□□□□ -0.2
CLK3-216ENST00000564468 RPL6Q02878 288 aaKnown RBP13.78□□□□□ -0.2
CLK3-216ENST00000564468 CREB5Q02930 508 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 ZBTB16Q05516 673 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 TRIM14Q14142 442 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 ARID5BQ14865 1188 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 C15orf59Q2T9L4 293 aaPredicted RBP13.78□□□□□ -0.2
CLK3-216ENST00000564468 PPM1JQ5JR12 505 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 C6orf118Q5T5N4 469 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 CYP2U1Q7Z449 544 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 C14orf80Q86SX3 495 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 CIR1Q86X95 450 aaPredicted RBP13.78□□□□□ -0.2
CLK3-216ENST00000564468 APCDD1Q8J025 514 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 FAM172AQ8WUF8 416 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 NTAN1Q96AB6 310 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 CNPY3Q9BT09 278 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 XPO4Q9C0E2 1151 aaKnown RBP13.78□□□□□ -0.2
CLK3-216ENST00000564468 MKRN2Q9H000 416 aaKnown RBP13.78□□□□□ -0.2
CLK3-216ENST00000564468 OSBPL2Q9H1P3 480 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 PPARGC1AQ9UBK2 798 aaKnown RBP13.78□□□□□ -0.2
CLK3-216ENST00000564468 SLC25A13Q9UJS0 675 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 CYP8B1Q9UNU6 501 aa13.78□□□□□ -0.2
CLK3-216ENST00000564468 IGHV1OR15-9A0A0B4J2B8 117 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 EDDM13A0A1B0GTR0 161 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 TCRBV5S1A1TA0A578 114 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 SLC30A4O14863 429 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 SRGAP2O75044 1071 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 GJB6O95452 261 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 FTLP02792 175 aaPredicted RBP13.77□□□□□ -0.21
CLK3-216ENST00000564468 RHOCP08134 193 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 MYBL1P10243 752 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 SKILP12757 684 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 TGM1P22735 817 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 RRM1P23921 792 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 GGCXP38435 758 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 MPLP40238 635 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 COPAP53621 1224 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 AIF1P55008 147 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 KRT83P78385 493 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 NUMA1Q14980 2115 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 HNRNPA1L2Q32P51 320 aaKnown RBP13.77□□□□□ -0.21
CLK3-216ENST00000564468 CXorf57Q6NSI4 855 aaKnown RBP13.77□□□□□ -0.21
CLK3-216ENST00000564468 ZNF783Q6ZMS7 281 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 PRR23CQ6ZRP0 262 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 C12orf50Q8NA57 414 aaPredicted RBP13.77□□□□□ -0.21
CLK3-216ENST00000564468 CPLX3Q8WVH0 158 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 FOXJ1Q92949 421 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 ERLEC1Q96DZ1 483 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 MCEEQ96PE7 176 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 NCAPGQ9BPX3 1015 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 FEM1AQ9BSK4 669 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.77□□□□□ -0.21
CLK3-216ENST00000564468 C2orf49Q9BVC5 232 aaPredicted RBP13.77□□□□□ -0.21
CLK3-216ENST00000564468 ZYG11BQ9C0D3 744 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 MUC3BQ9H195 1237 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 MRPL47Q9HD33 250 aaKnown RBP13.77□□□□□ -0.21
CLK3-216ENST00000564468 PARD6AQ9NPB6 346 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 PRSS16Q9NQE7 514 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 ANLNQ9NQW6 1124 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 TAS2R14Q9NYV8 317 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 USP36Q9P275 1121 aaKnown RBP13.77□□□□□ -0.21
CLK3-216ENST00000564468 OR12D3Q9UGF7 316 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 MBD1Q9UIS9 605 aaPredicted RBP13.77□□□□□ -0.21
CLK3-216ENST00000564468 VPS28Q9UK41 221 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 SCML1Q9UN30 329 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 SCINQ9Y6U3 715 aa13.77□□□□□ -0.21
CLK3-216ENST00000564468 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.76□□□□□ -0.21
CLK3-216ENST00000564468 I6L893 689 aaPredicted RBP13.76□□□□□ -0.21
CLK3-216ENST00000564468 DDX3XO00571 662 aaKnown RBP eCLIP13.76□□□□□ -0.21
CLK3-216ENST00000564468 DNTTP04053 509 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 C7P10643 843 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 MZF1P28698 734 aaPredicted RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms