RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 ZBTB16Q05516 673 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 TRIM14Q14142 442 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 ARID5BQ14865 1188 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 C15orf59Q2T9L4 293 aaPredicted RBP13.78□□□□□ -0.2
CLK3-213ENST00000563842 C6orf118Q5T5N4 469 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 CYP2U1Q7Z449 544 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 C14orf80Q86SX3 495 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 CIR1Q86X95 450 aaPredicted RBP13.78□□□□□ -0.2
CLK3-213ENST00000563842 APCDD1Q8J025 514 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 FAM172AQ8WUF8 416 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 NTAN1Q96AB6 310 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 CNPY3Q9BT09 278 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 XPO4Q9C0E2 1151 aaKnown RBP13.78□□□□□ -0.2
CLK3-213ENST00000563842 MKRN2Q9H000 416 aaKnown RBP13.78□□□□□ -0.2
CLK3-213ENST00000563842 OSBPL2Q9H1P3 480 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 PPARGC1AQ9UBK2 798 aaKnown RBP13.78□□□□□ -0.2
CLK3-213ENST00000563842 SLC25A13Q9UJS0 675 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 CYP8B1Q9UNU6 501 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 CEP250Q9BV73 2442 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 EPG5Q9HCE0 2579 aa13.78□□□□□ -0.2
CLK3-213ENST00000563842 FRYLO94915 3013 aa13.77□□□□□ -0.2
CLK3-213ENST00000563842 IGHV1OR15-9A0A0B4J2B8 117 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 EDDM13A0A1B0GTR0 161 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 TCRBV5S1A1TA0A578 114 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 SRGAP2O75044 1071 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 GJB6O95452 261 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 FTLP02792 175 aaPredicted RBP13.77□□□□□ -0.21
CLK3-213ENST00000563842 RHOCP08134 193 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 MYBL1P10243 752 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 SKILP12757 684 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 RRM1P23921 792 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 GGCXP38435 758 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 MPLP40238 635 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 COPAP53621 1224 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 AIF1P55008 147 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 KRT83P78385 493 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 NUMA1Q14980 2115 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 HNRNPA1L2Q32P51 320 aaKnown RBP13.77□□□□□ -0.21
CLK3-213ENST00000563842 CXorf57Q6NSI4 855 aaKnown RBP13.77□□□□□ -0.21
CLK3-213ENST00000563842 ZNF783Q6ZMS7 281 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 PRR23CQ6ZRP0 262 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 C12orf50Q8NA57 414 aaPredicted RBP13.77□□□□□ -0.21
CLK3-213ENST00000563842 CPLX3Q8WVH0 158 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 FOXJ1Q92949 421 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 ERLEC1Q96DZ1 483 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 MCEEQ96PE7 176 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 NCAPGQ9BPX3 1015 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 FEM1AQ9BSK4 669 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.77□□□□□ -0.21
CLK3-213ENST00000563842 C2orf49Q9BVC5 232 aaPredicted RBP13.77□□□□□ -0.21
CLK3-213ENST00000563842 ZYG11BQ9C0D3 744 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 MUC3BQ9H195 1237 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 MRPL47Q9HD33 250 aaKnown RBP13.77□□□□□ -0.21
CLK3-213ENST00000563842 PARD6AQ9NPB6 346 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 PRSS16Q9NQE7 514 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 ANLNQ9NQW6 1124 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 TAS2R14Q9NYV8 317 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 USP36Q9P275 1121 aaKnown RBP13.77□□□□□ -0.21
CLK3-213ENST00000563842 OR12D3Q9UGF7 316 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 MBD1Q9UIS9 605 aaPredicted RBP13.77□□□□□ -0.21
CLK3-213ENST00000563842 VPS28Q9UK41 221 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 SCML1Q9UN30 329 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 SCINQ9Y6U3 715 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 CHD8Q9HCK8 2581 aa13.77□□□□□ -0.21
CLK3-213ENST00000563842 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 I6L893 689 aaPredicted RBP13.76□□□□□ -0.21
CLK3-213ENST00000563842 DDX3XO00571 662 aaKnown RBP eCLIP13.76□□□□□ -0.21
CLK3-213ENST00000563842 DNTTP04053 509 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 C7P10643 843 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 TGM1P22735 817 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 MZF1P28698 734 aaPredicted RBP13.76□□□□□ -0.21
CLK3-213ENST00000563842 CD6P30203 668 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 OR1E1P30953 314 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 HDAC4P56524 1084 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 RPL7AP62424 266 aaKnown RBP13.76□□□□□ -0.21
CLK3-213ENST00000563842 MAMLD1Q13495 774 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 TSR1Q2NL82 804 aaKnown RBP13.76□□□□□ -0.21
CLK3-213ENST00000563842 TTC31Q49AM3 519 aaPredicted RBP13.76□□□□□ -0.21
CLK3-213ENST00000563842 ALFQ53S48 1182 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 EFHC2Q5JST6 749 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 PLA2G2CQ5R387 149 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 PPP1R15BQ5SWA1 713 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 LYSMD4Q5XG99 296 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 E4F1Q66K89 784 aaPredicted RBP13.76□□□□□ -0.21
CLK3-213ENST00000563842 ZNF776Q68DI1 518 aaPredicted RBP13.76□□□□□ -0.21
CLK3-213ENST00000563842 SPECC1LQ69YQ0 1117 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 PLEKHA7Q6IQ23 1121 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 SCYL2Q6P3W7 929 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 RABEPKQ7Z6M1 372 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 SLFN11Q7Z7L1 901 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 TMEFF1Q8IYR6 380 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 ZNF683Q8IZ20 524 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 ZNF366Q8N895 744 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 MYO19Q96H55 970 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 MRGPRX3Q96LB0 322 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 ISCUQ9H1K1 167 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 SLC6A17Q9H1V8 727 aa13.76□□□□□ -0.21
CLK3-213ENST00000563842 ILVBLA1L0T0 632 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 CCP110O43303 1012 aa13.75□□□□□ -0.21
CLK3-213ENST00000563842 RNF8O76064 485 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms