RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 KLHL8Q9P2G9 620 aaPredicted RBP21.81■■□□□ 1.08
CLN3-209ENST00000561689 MYO7AQ13402 2215 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 TRDMT1O14717 391 aaKnown RBP21.81■■□□□ 1.08
CLN3-209ENST00000561689 SCAMP3O14828 347 aaKnown RBP21.81■■□□□ 1.08
CLN3-209ENST00000561689 OPHN1O60890 802 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 CLASP2O75122 1294 aaKnown RBP21.81■■□□□ 1.08
CLN3-209ENST00000561689 ERVK-21P61565 698 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 PDIA2Q13087 525 aaKnown RBP21.81■■□□□ 1.08
CLN3-209ENST00000561689 ZBTB17Q13105 803 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 MSS51Q4VC12 460 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 ACBD5Q5T8D3 534 aaPredicted RBP21.81■■□□□ 1.08
CLN3-209ENST00000561689 CENPUQ71F23 418 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 MAB21L3Q8N8X9 362 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 TTC16Q8NEE8 873 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 MED4Q9NPJ6 270 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 ASAH2Q9NR71 780 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 AGO1Q9UL18 857 aaKnown RBP21.81■■□□□ 1.08
CLN3-209ENST00000561689 SMAPO00193 183 aa21.8■■□□□ 1.08
CLN3-209ENST00000561689 TTC4O95801 387 aa21.8■■□□□ 1.08
CLN3-209ENST00000561689 PAPOLAP51003 745 aaKnown RBP21.8■■□□□ 1.08
CLN3-209ENST00000561689 ARL4CP56559 192 aa21.8■■□□□ 1.08
CLN3-209ENST00000561689 SMAD3P84022 425 aaKnown RBP21.8■■□□□ 1.08
CLN3-209ENST00000561689 ZXDBP98169 803 aa21.8■■□□□ 1.08
CLN3-209ENST00000561689 ZNF844Q08AG5 666 aa21.8■■□□□ 1.08
CLN3-209ENST00000561689 LRIG3Q6UXM1 1119 aa21.8■■□□□ 1.08
CLN3-209ENST00000561689 RBM23Q86U06 439 aaKnown RBP21.8■■□□□ 1.08
CLN3-209ENST00000561689 RELL1Q8IUW5 271 aa21.8■■□□□ 1.08
CLN3-209ENST00000561689 ZBED8Q8IZ13 594 aa21.8■■□□□ 1.08
CLN3-209ENST00000561689 AGAP3Q96P47 875 aa21.8■■□□□ 1.08
CLN3-209ENST00000561689 SH3GL2Q99962 352 aa21.8■■□□□ 1.08
CLN3-209ENST00000561689 LRRC4CQ9HCJ2 640 aa21.8■■□□□ 1.08
CLN3-209ENST00000561689 E7EVH7 732 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 H3BNC9 293 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 MAFKO60675 156 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 IFFO1Q0D2I5 559 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 STXBP5Q5T5C0 1151 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 CEP128Q6ZU80 1094 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 UMODL1-AS1Q8N2C9 162 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 GOLGA6L1Q8N7Z2 621 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 ZNF212Q9UDV6 495 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 CPQQ9Y646 472 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 ZBTB24O43167 697 aaPredicted RBP21.79■■□□□ 1.08
CLN3-209ENST00000561689 MTSS1O43312 755 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 OPA1O60313 960 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 AVILO75366 819 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 OLFM2O95897 454 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 JCHAINP01591 159 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 NUDT17P0C025 328 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 PSMB4P28070 264 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 MAGEA6P43360 314 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 ANKMY2Q8IV38 441 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 SAMD11Q96NU1 681 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 TSGA13Q96PP4 275 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 PBX4Q9BYU1 374 aa21.79■■□□□ 1.08
CLN3-209ENST00000561689 CCNCP24863 283 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 OR1E1P30953 314 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 CCR2P41597 374 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 GABPB1Q06547 395 aaPredicted RBP21.78■■□□□ 1.08
CLN3-209ENST00000561689 SEMA5AQ13591 1074 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 PARP6Q2NL67 630 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 BBS9Q3SYG4 887 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 PDIK1LQ8N165 341 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 ZSCAN18Q8TBC5 510 aaPredicted RBP21.78■■□□□ 1.08
CLN3-209ENST00000561689 ADAMTS19Q8TE59 1207 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 USP33Q8TEY7 942 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 EXOC4Q96A65 974 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 ARL8AQ96BM9 186 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 HMCESQ96FZ2 354 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 GCNAQ96QF7 691 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.78■■□□□ 1.08
CLN3-209ENST00000561689 ZFP37Q9Y6Q3 630 aaPredicted RBP21.78■■□□□ 1.08
CLN3-209ENST00000561689 NUP205Q92621 2012 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 ALOX15BO15296 676 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 CKMP06732 381 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 CDC25CP30307 473 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 FDFT1P37268 417 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 NDST2P52849 883 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 RPS24P62847 133 aaKnown RBP21.78■■□□□ 1.08
CLN3-209ENST00000561689 TEX44Q53QW1 395 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 ADGRF1Q5T601 910 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 ZNF697Q5TEC3 545 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 AZIN2Q96A70 460 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 PRICKLE1Q96MT3 831 aaPredicted RBP21.78■■□□□ 1.08
CLN3-209ENST00000561689 SERPINB12Q96P63 405 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 DONSONQ9NYP3 566 aa21.78■■□□□ 1.08
CLN3-209ENST00000561689 RASA4BC9J798 803 aa21.77■■□□□ 1.08
CLN3-209ENST00000561689 RASA4O43374 803 aa21.77■■□□□ 1.08
CLN3-209ENST00000561689 TSPAN3O60637 253 aa21.77■■□□□ 1.08
CLN3-209ENST00000561689 ZNF189O75820 626 aaPredicted RBP21.77■■□□□ 1.08
CLN3-209ENST00000561689 CCNB1P14635 433 aa21.77■■□□□ 1.08
CLN3-209ENST00000561689 LMAN1P49257 510 aa21.77■■□□□ 1.08
CLN3-209ENST00000561689 NUMBP49757 651 aa21.77■■□□□ 1.08
CLN3-209ENST00000561689 SGSHP51688 502 aa21.77■■□□□ 1.08
CLN3-209ENST00000561689 ZNF33AQ06730 810 aa21.77■■□□□ 1.08
CLN3-209ENST00000561689 ADGRD2Q7Z7M1 963 aa21.77■■□□□ 1.08
CLN3-209ENST00000561689 PDCD7Q8N8D1 485 aaKnown RBP21.77■■□□□ 1.08
CLN3-209ENST00000561689 ARNTL2Q8WYA1 636 aa21.77■■□□□ 1.08
CLN3-209ENST00000561689 WDR83Q9BRX9 315 aaKnown RBP21.77■■□□□ 1.08
CLN3-209ENST00000561689 NKX2-4Q9H2Z4 354 aa21.77■■□□□ 1.08
CLN3-209ENST00000561689 CENPHQ9H3R5 247 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms