RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 WASH4PA8MWX3 477 aa22.37■■□□□ 1.17
SNX1-210ENST00000560260 H3BRJ5 948 aa22.37■■□□□ 1.17
SNX1-210ENST00000560260 KRT86O43790 486 aa22.37■■□□□ 1.17
SNX1-210ENST00000560260 DPYSL3Q14195 570 aa22.37■■□□□ 1.17
SNX1-210ENST00000560260 LRRC32Q14392 662 aa22.37■■□□□ 1.17
SNX1-210ENST00000560260 KRT81Q14533 505 aa22.37■■□□□ 1.17
SNX1-210ENST00000560260 PLEKHG6Q3KR16 790 aa22.37■■□□□ 1.17
SNX1-210ENST00000560260 DGKKQ5KSL6 1271 aa22.37■■□□□ 1.17
SNX1-210ENST00000560260 EGFLAMQ63HQ2 1017 aa22.37■■□□□ 1.17
SNX1-210ENST00000560260 AHI1Q8N157 1196 aa22.37■■□□□ 1.17
SNX1-210ENST00000560260 RNF10Q8N5U6 811 aaKnown RBP22.37■■□□□ 1.17
SNX1-210ENST00000560260 ZNF557Q8N988 423 aaPredicted RBP22.37■■□□□ 1.17
SNX1-210ENST00000560260 WFIKKN2Q8TEU8 576 aa22.37■■□□□ 1.17
SNX1-210ENST00000560260 EXOC4Q96A65 974 aa22.37■■□□□ 1.17
SNX1-210ENST00000560260 ETNK2Q9NVF9 386 aa22.37■■□□□ 1.17
SNX1-210ENST00000560260 KIAA1522Q9P206 1035 aaPredicted RBP22.37■■□□□ 1.17
SNX1-210ENST00000560260 DNAI1Q9UI46 699 aa22.37■■□□□ 1.17
SNX1-210ENST00000560260 C3orf70A6NLC5 250 aaPredicted RBP22.36■■□□□ 1.17
SNX1-210ENST00000560260 PSTPIP1O43586 416 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 FTCDO95954 541 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 KRT1P04264 644 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 ERCC2P18074 760 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 OR1E1P30953 314 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 TNFRSF4P43489 277 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 MAPKAPK2P49137 400 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 CLCN5P51795 746 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 IFI16Q16666 785 aaKnown RBP22.36■■□□□ 1.17
SNX1-210ENST00000560260 MBLAC2Q68D91 279 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 SETD3Q86TU7 594 aaPredicted RBP22.36■■□□□ 1.17
SNX1-210ENST00000560260 NT5DC3Q86UY8 548 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 CCDC117Q8IWD4 279 aaPredicted RBP22.36■■□□□ 1.17
SNX1-210ENST00000560260 OR7D4Q8NG98 312 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 KIAA1524Q8TCG1 905 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 USP33Q8TEY7 942 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 PSMB7Q99436 277 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 KLC2Q9H0B6 622 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 CHRDQ9H2X0 955 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 STARD13Q9Y3M8 1113 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 ATG2BQ96BY7 2078 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 ZDBF2Q9HCK1 2354 aa22.36■■□□□ 1.17
SNX1-210ENST00000560260 A0A0D9SEW6 157 aa22.35■■□□□ 1.17
SNX1-210ENST00000560260 USP27XA6NNY8 438 aa22.35■■□□□ 1.17
SNX1-210ENST00000560260 DCLK1O15075 740 aa22.35■■□□□ 1.17
SNX1-210ENST00000560260 FGF10O15520 208 aaPredicted RBP22.35■■□□□ 1.17
SNX1-210ENST00000560260 GPR37L1O60883 481 aa22.35■■□□□ 1.17
SNX1-210ENST00000560260 AMPD1P23109 780 aa22.35■■□□□ 1.17
SNX1-210ENST00000560260 KDELR1P24390 212 aa22.35■■□□□ 1.17
SNX1-210ENST00000560260 CTNNA1P35221 906 aaKnown RBP22.35■■□□□ 1.17
SNX1-210ENST00000560260 CTSOP43234 321 aaPredicted RBP22.35■■□□□ 1.17
SNX1-210ENST00000560260 HCAR3P49019 387 aa22.35■■□□□ 1.17
SNX1-210ENST00000560260 ZNF135P52742 658 aaPredicted RBP22.35■■□□□ 1.17
SNX1-210ENST00000560260 FBXO43Q4G163 708 aa22.35■■□□□ 1.17
SNX1-210ENST00000560260 PREPLQ4J6C6 727 aaPredicted RBP22.35■■□□□ 1.17
SNX1-210ENST00000560260 C6orf118Q5T5N4 469 aa22.35■■□□□ 1.17
SNX1-210ENST00000560260 RNF219Q5W0B1 726 aaPredicted RBP22.35■■□□□ 1.17
SNX1-210ENST00000560260 NPWQ8N729 165 aa22.35■■□□□ 1.17
SNX1-210ENST00000560260 NETO2Q8NC67 525 aa22.35■■□□□ 1.17
SNX1-210ENST00000560260 FAF2Q96CS3 445 aa22.35■■□□□ 1.17
SNX1-210ENST00000560260 ACOX2Q99424 681 aa22.35■■□□□ 1.17
SNX1-210ENST00000560260 CIPCQ9C0C6 399 aa22.35■■□□□ 1.17
SNX1-210ENST00000560260 CATSPERBQ9H7T0 1116 aa22.35■■□□□ 1.17
SNX1-210ENST00000560260 POLR3BQ9NW08 1133 aaPredicted RBP22.35■■□□□ 1.17
SNX1-210ENST00000560260 C2orf42Q9NWW7 574 aa22.35■■□□□ 1.17
SNX1-210ENST00000560260 ELOVL2Q9NXB9 296 aa22.35■■□□□ 1.17
SNX1-210ENST00000560260 ILVBLA1L0T0 632 aa22.34■■□□□ 1.17
SNX1-210ENST00000560260 LRRD1A4D1F6 860 aa22.34■■□□□ 1.17
SNX1-210ENST00000560260 CTNNA2P26232 953 aa22.34■■□□□ 1.17
SNX1-210ENST00000560260 TIE1P35590 1138 aa22.34■■□□□ 1.17
SNX1-210ENST00000560260 ACVRL1P37023 503 aa22.34■■□□□ 1.17
SNX1-210ENST00000560260 ARL4AP40617 200 aa22.34■■□□□ 1.17
SNX1-210ENST00000560260 RPS9P46781 194 aaKnown RBP22.34■■□□□ 1.17
SNX1-210ENST00000560260 PLK1P53350 603 aa22.34■■□□□ 1.17
SNX1-210ENST00000560260 EIF4HQ15056 248 aaKnown RBP22.34■■□□□ 1.17
SNX1-210ENST00000560260 C2orf27AQ580R0 203 aa22.34■■□□□ 1.17
SNX1-210ENST00000560260 KCTD6Q8NC69 237 aa22.34■■□□□ 1.17
SNX1-210ENST00000560260 RPLP0P6Q8NHW5 317 aa22.34■■□□□ 1.17
SNX1-210ENST00000560260 CYB5D2Q8WUJ1 264 aa22.34■■□□□ 1.17
SNX1-210ENST00000560260 TTC17Q96AE7 1141 aa22.34■■□□□ 1.17
SNX1-210ENST00000560260 ZNF670Q9BS34 389 aa22.34■■□□□ 1.17
SNX1-210ENST00000560260 FEM1AQ9BSK4 669 aa22.34■■□□□ 1.17
SNX1-210ENST00000560260 CALN1Q9BXU9 219 aa22.34■■□□□ 1.17
SNX1-210ENST00000560260 RCOR3Q9P2K3 495 aaPredicted RBP22.34■■□□□ 1.17
SNX1-210ENST00000560260 PACSIN2Q9UNF0 486 aaPredicted RBP22.34■■□□□ 1.17
SNX1-210ENST00000560260 PRR33A8MZF0 331 aa22.33■■□□□ 1.17
SNX1-210ENST00000560260 GLDCP23378 1020 aa22.33■■□□□ 1.17
SNX1-210ENST00000560260 GNA12Q03113 381 aa22.33■■□□□ 1.17
SNX1-210ENST00000560260 SLC12A1Q13621 1099 aa22.33■■□□□ 1.17
SNX1-210ENST00000560260 PDK2Q15119 407 aa22.33■■□□□ 1.17
SNX1-210ENST00000560260 PTPRNQ16849 979 aa22.33■■□□□ 1.17
SNX1-210ENST00000560260 TMEM31Q5JXX7 168 aa22.33■■□□□ 1.17
SNX1-210ENST00000560260 MFSD7Q6UXD7 560 aa22.33■■□□□ 1.17
SNX1-210ENST00000560260 ARHGAP12Q8IWW6 846 aa22.33■■□□□ 1.17
SNX1-210ENST00000560260 TP53INP2Q8IXH6 220 aa22.33■■□□□ 1.17
SNX1-210ENST00000560260 KATNAL2Q8IYT4 538 aa22.33■■□□□ 1.17
SNX1-210ENST00000560260 SYNPOQ8N3V7 929 aa22.33■■□□□ 1.17
SNX1-210ENST00000560260 ALLCQ8N6M5 410 aa22.33■■□□□ 1.17
SNX1-210ENST00000560260 IL17RCQ8NAC3 791 aa22.33■■□□□ 1.17
SNX1-210ENST00000560260 PCDH19Q8TAB3 1148 aa22.33■■□□□ 1.17
SNX1-210ENST00000560260 MUC3BQ9H195 1237 aa22.33■■□□□ 1.17
SNX1-210ENST00000560260 RETREG1Q9H6L5 497 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms