RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 IMPG1Q17R60 797 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 LY6KQ17RY6 165 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 PTPN20Q4JDL3 420 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 MTX3Q5HYI7 312 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 C6orf10Q5SRN2 563 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 OTUD3Q5T2D3 398 aaPredicted RBP7.25□□□□□ -1.25
USP3-210ENST00000559192 ZNF554Q86TJ5 538 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 ADAM32Q8TC27 787 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 CELF6Q96J87 481 aaKnown RBP7.25□□□□□ -1.25
USP3-210ENST00000559192 OMDQ99983 421 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 FICDQ9BVA6 458 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 IDI2Q9BXS1 227 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 WDR70Q9NW82 654 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 GNEQ9Y223 722 aaKnown RBP7.25□□□□□ -1.25
USP3-210ENST00000559192 TDRKHQ9Y2W6 561 aaKnown RBP7.25□□□□□ -1.25
USP3-210ENST00000559192 MYPNQ86TC9 1320 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 CHD4Q14839 1912 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 KPNA4O00629 521 aaPredicted RBP7.25□□□□□ -1.25
USP3-210ENST00000559192 ZSCAN9O15535 394 aaPredicted RBP7.25□□□□□ -1.25
USP3-210ENST00000559192 ITM2AO43736 263 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 CCNE2O96020 404 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 CCDC130P13994 396 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 IDH3AP50213 366 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 ZNF143P52747 638 aaPredicted RBP7.25□□□□□ -1.25
USP3-210ENST00000559192 NFYCQ13952 458 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 TWF2Q6IBS0 349 aaKnown RBP7.25□□□□□ -1.25
USP3-210ENST00000559192 NAPEPLDQ6IQ20 393 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 PACS1Q6VY07 963 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 ZDHHC14Q8IZN3 488 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 AHI1Q8N157 1196 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 C7orf43Q8WVR3 580 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 GLMNQ92990 594 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 TNIP3Q96KP6 325 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 PLEKHG4BQ96PX9 1271 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 SNX15Q9NRS6 342 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 EURLQ9NYK6 297 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 SLC13A4Q9UKG4 626 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 FZD1Q9UP38 647 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 PIN4Q9Y237 131 aaKnown RBP7.25□□□□□ -1.25
USP3-210ENST00000559192 ACOT9Q9Y305 439 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 MYO5AQ9Y4I1 1855 aaKnown RBP7.25□□□□□ -1.25
USP3-210ENST00000559192 E5RI56 91 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 SNPHO15079 494 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 LRCH4O75427 683 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 BAIAP3O94812 1187 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 PARNO95453 639 aaKnown RBP7.25□□□□□ -1.25
USP3-210ENST00000559192 PTPN7P35236 360 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 ITGADQ13349 1161 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 CDCA2Q69YH5 1023 aaPredicted RBP7.25□□□□□ -1.25
USP3-210ENST00000559192 DPY19L2Q6NUT2 758 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 XRRA1Q6P2D8 792 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 CHSY1Q86X52 802 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 SCN4BQ8IWT1 228 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 ERLEC1Q96DZ1 483 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 TSPAN17Q96FV3 270 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 LGMNQ99538 433 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 MIPEPQ99797 713 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 KCTD14Q9BQ13 255 aaPredicted RBP7.25□□□□□ -1.25
USP3-210ENST00000559192 CROTQ9UKG9 612 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 ITGA11Q9UKX5 1188 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 SNCAIPQ9Y6H5 919 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 PLIN4Q96Q06 1357 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 DCAF8L1A6NGE4 600 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 CXorf49A8MYA2 514 aaPredicted RBP7.25□□□□□ -1.25
USP3-210ENST00000559192 CFAP99D6REC4 459 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 CST3P01034 146 aaPredicted RBP7.25□□□□□ -1.25
USP3-210ENST00000559192 NFICP08651 508 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 LRPAP1P30533 357 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 GRIA3P42263 894 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 SIX1Q15475 284 aaPredicted RBP7.25□□□□□ -1.25
USP3-210ENST00000559192 MAPK11Q15759 364 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 ANKS1BQ7Z6G8 1248 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 FAM156AQ8NDB6 213 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 TNIP2Q8NFZ5 429 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 NKD2Q969F2 451 aaPredicted RBP7.25□□□□□ -1.25
USP3-210ENST00000559192 PABPC5Q96DU9 382 aaKnown RBP7.25□□□□□ -1.25
USP3-210ENST00000559192 CPXM1Q96SM3 734 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 RTKNQ9BST9 563 aa7.25□□□□□ -1.25
USP3-210ENST00000559192 SLIT2O94813 1529 aa7.24□□□□□ -1.25
USP3-210ENST00000559192 RGSL1A5PLK6 1076 aa7.24□□□□□ -1.25
USP3-210ENST00000559192 CLOCKO15516 846 aa7.24□□□□□ -1.25
USP3-210ENST00000559192 PAPSS1O43252 624 aaPredicted RBP7.24□□□□□ -1.25
USP3-210ENST00000559192 TOP3BO95985 862 aaKnown RBP7.24□□□□□ -1.25
USP3-210ENST00000559192 CSH1P0DML2 217 aa7.24□□□□□ -1.25
USP3-210ENST00000559192 CSH2P0DML3 217 aa7.24□□□□□ -1.25
USP3-210ENST00000559192 HSD17B4P51659 736 aa7.24□□□□□ -1.25
USP3-210ENST00000559192 DLG1Q12959 904 aa7.24□□□□□ -1.25
USP3-210ENST00000559192 RALGDSQ12967 914 aa7.24□□□□□ -1.25
USP3-210ENST00000559192 VPS72Q15906 364 aa7.24□□□□□ -1.25
USP3-210ENST00000559192 SFT2D3Q587I9 215 aa7.24□□□□□ -1.25
USP3-210ENST00000559192 GPR107Q5VW38 600 aa7.24□□□□□ -1.25
USP3-210ENST00000559192 KLHDC10Q6PID8 442 aa7.24□□□□□ -1.25
USP3-210ENST00000559192 GK5Q6ZS86 529 aa7.24□□□□□ -1.25
USP3-210ENST00000559192 XYLT1Q86Y38 959 aa7.24□□□□□ -1.25
USP3-210ENST00000559192 URGCPQ8TCY9 931 aa7.24□□□□□ -1.25
USP3-210ENST00000559192 SLC7A6OSQ96CW6 309 aaPredicted RBP7.24□□□□□ -1.25
USP3-210ENST00000559192 ZNF560Q96MR9 790 aa7.24□□□□□ -1.25
USP3-210ENST00000559192 PORCNQ9H237 461 aa7.24□□□□□ -1.25
USP3-210ENST00000559192 NCKIPSDQ9NZQ3 722 aa7.24□□□□□ -1.25
USP3-210ENST00000559192 MPP6Q9NZW5 540 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms