RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	KANSL1	Q7Z3B3	1105 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	IQCH	Q86VS3	1027 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	APCDD1	Q8J025	514 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	DCBLD1	Q8N8Z6	715 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	FCRL2	Q96LA5	508 aa	Predicted RBP	13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	HSFY1	Q96LI6	401 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	ARHGAP20	Q9P2F6	1191 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	TLR6	Q9Y2C9	796 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	ITIH6	Q6UXX5	1313 aa		13.09	□□□□□ -0.31
SHMT2-223	ENST00000556689	KALRN	O60229	2985 aa		13.08	□□□□□ -0.31
SHMT2-223	ENST00000556689	FBXO21	O94952	628 aa		13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	MT-CO3	P00414	261 aa		13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	TBXAS1	P24557	533 aa	Predicted RBP	13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	NDUFA8	P51970	172 aa		13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	PPP2CB	P62714	309 aa		13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	PPP2CA	P67775	309 aa		13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	CXADR	P78310	365 aa		13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	NUCB2	P80303	420 aa		13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	CFHR1	Q03591	330 aa		13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	LRMP	Q12912	555 aa		13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	NNT	Q13423	1086 aa		13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	ELAVL3	Q14576	367 aa	Known RBP	13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	SPACA3	Q8IXA5	215 aa		13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	CLEC4C	Q8WTT0	213 aa		13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	TFAP2B	Q92481	460 aa		13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	SLC39A13	Q96H72	371 aa		13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	SERPINB11	Q96P15	392 aa		13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	MIS12	Q9H081	205 aa		13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	CYTH4	Q9UIA0	394 aa		13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	DMTF1	Q9Y222	760 aa		13.08	□□□□□ -0.32
SHMT2-223	ENST00000556689	MUC22	E2RYF6	1773 aa	Predicted RBP	13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	SLC7A4	O43246	635 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	SIGLEC6	O43699	453 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	MOCS2	O96007	188 aa	Predicted RBP	13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	FYN	P06241	537 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	MAT2A	P31153	395 aa	Known RBP	13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	DRD3	P35462	400 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	KCNH2	Q12809	1159 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	ZNF211	Q13398	564 aa	Predicted RBP	13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	SLC12A1	Q13621	1099 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	PKP1	Q13835	747 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	STIL	Q15468	1287 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	PROX2	Q3B8N5	592 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	HS1BP3	Q53T59	392 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	FAM46C	Q5VWP2	391 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	TMEM270	Q6UE05	265 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	KDM7A	Q6ZMT4	941 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	DSG4	Q86SJ6	1040 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	ERICH1	Q86X53	443 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	LGI2	Q8N0V4	545 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	UBR7	Q8N806	425 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	DQX1	Q8TE96	717 aa	Known RBP	13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	SPATA32	Q96LK8	384 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	SPAG5	Q96R06	1193 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	TJP2	Q9UDY2	1190 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	NAALADL1	Q9UQQ1	740 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	PCDHB4	Q9Y5E5	795 aa		13.07	□□□□□ -0.32
SHMT2-223	ENST00000556689	FAM237A	A0A1B0GTK4	181 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	PRAMEF26	H0Y7S4	382 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689		M0QYV0	167 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	RNF225	M0QZC1	329 aa	Predicted RBP	13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	ERVH48-1	M5A8F1	160 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	TRIM38	O00635	465 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	SDC3	O75056	442 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	RTN2	O75298	545 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	VAV1	P15498	845 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	STK19	P49842	368 aa	Predicted RBP	13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	DAB2	P98082	770 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	SULT2A1	Q06520	285 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	TAF1B	Q53T94	588 aa	Predicted RBP	13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	BROX	Q5VW32	411 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	PCSK4	Q6UW60	755 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	KRBA2	Q6ZNG9	492 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	SMYD4	Q8IYR2	804 aa	Predicted RBP	13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	SLC25A45	Q8N413	288 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	ZNF248	Q8NDW4	579 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	FRS2	Q8WU20	508 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	FAM131C	Q96AQ9	280 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	FAM149B1	Q96BN6	582 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	KLHDC7B	Q96G42	594 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	NAF1	Q96HR8	494 aa	Known RBP	13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	LGMN	Q99538	433 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	XPO7	Q9UIA9	1087 aa	Known RBP	13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	PLXNA2	O75051	1894 aa		13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	SETX	Q7Z333	2677 aa	Known RBP	13.06	□□□□□ -0.32
SHMT2-223	ENST00000556689	HELZ2	Q9BYK8	2649 aa	Known RBP	13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689		J3QKU1	62 aa		13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	SLC16A3	O15427	465 aa	Known RBP	13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	SART1	O43290	800 aa	Known RBP	13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	PLRG1	O43660	514 aa	Known RBP	13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	APOE	P02649	317 aa		13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	TACR2	P21452	398 aa		13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	METAP1	P53582	386 aa		13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	FKBP3	Q00688	224 aa	Known RBP	13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	ACCSL	Q4AC99	568 aa		13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	SETMAR	Q53H47	684 aa	Predicted RBP	13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	RAP1GAP2	Q684P5	730 aa		13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	BEND5	Q7L4P6	421 aa		13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	TRIM69	Q86WT6	500 aa		13.05	□□□□□ -0.32
SHMT2-223	ENST00000556689	CHSY1	Q86X52	802 aa		13.05	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms