RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 TNFRSF10BO14763 440 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 PEX11AO75192 247 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 RPL17P18621 184 aaKnown RBP11.98□□□□□ -0.49
SHMT2-212ENST00000554467 FOXN2P32314 431 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 CYP2C18P33260 490 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 SLC11A1P49279 550 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 SEMA3BQ13214 749 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 LBRQ14739 615 aaKnown RBP11.98□□□□□ -0.49
SHMT2-212ENST00000554467 PDK1Q15118 436 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 PRKD1Q15139 912 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-212ENST00000554467 SLC1A5Q15758 541 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 FAM117BQ6P1L5 589 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 UNC5AQ6ZN44 842 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 C4orf50Q6ZRC1 276 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 SMC6Q96SB8 1091 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 LBHD1Q9BQE6 289 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-212ENST00000554467 RNF208Q9H0X6 261 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 MPP6Q9NZW5 540 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 PHF24Q9UPV7 400 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 FRMPD3Q5JV73 1810 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 VWA8A3KMH1 1905 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 NLRC5Q86WI3 1866 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 FAM47DPA6NHR8 397 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 TBKBP1A7MCY6 615 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 ZNF487B1APH4 448 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 SUN1O94901 812 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 HMBSP08397 361 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 CPB1P15086 417 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 ATP6V1C1P21283 382 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 DNAJC3Q13217 504 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 C1QTNF12Q5T7M4 302 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 PRSS55Q6UWB4 352 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-212ENST00000554467 FAM136AQ96C01 138 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 CYTH2Q99418 400 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 SEPT5Q99719 369 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-212ENST00000554467 TMEM161AQ9NX61 479 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 ADAM28Q9UKQ2 775 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 USP15Q9Y4E8 981 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-212ENST00000554467 SQORQ9Y6N5 450 aa11.98□□□□□ -0.49
SHMT2-212ENST00000554467 CHD7Q9P2D1 2997 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 C2CD2LO14523 706 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 NDC80O14777 642 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 PAGE1O75459 146 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 TPBGLP0DKB5 382 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 TYMPP19971 482 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 MGAT1P26572 445 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 SCNN1BP51168 640 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 ZBTB17Q13105 803 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 CGB2Q6NT52 195 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 LONP2Q86WA8 852 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 MIB1Q86YT6 1006 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 BCL7CQ8WUZ0 217 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-212ENST00000554467 CASD1Q96PB1 797 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 GMIPQ9P107 970 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 RCOR3Q9P2K3 495 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-212ENST00000554467 IKBKGQ9Y6K9 419 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 MAPRE1Q15691 268 aaKnown RBP11.97□□□□□ -0.49
SHMT2-212ENST00000554467 RTP2Q5QGT7 225 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 ZNF513Q8N8E2 541 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-212ENST00000554467 NTAN1Q96AB6 310 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 SERAC1Q96JX3 654 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 SIGLEC10Q96LC7 697 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 PTPRDP23468 1912 aa11.97□□□□□ -0.49
SHMT2-212ENST00000554467 ZBTB24O43167 697 aaPredicted RBP11.96□□□□□ -0.49
SHMT2-212ENST00000554467 INHBAP08476 426 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 CCNB1P14635 433 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 CDK7P50613 346 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 PAFAH1B3Q15102 231 aaKnown RBP11.96□□□□□ -0.49
SHMT2-212ENST00000554467 KLHL38Q2WGJ6 581 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 PLEKHG4Q58EX7 1191 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 C14orf80Q86SX3 495 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 PSTKQ8IV42 348 aaKnown RBP11.96□□□□□ -0.49
SHMT2-212ENST00000554467 GIPC2Q8TF65 315 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 MARCH5Q9NX47 278 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 CHCHD3Q9NX63 227 aaKnown RBP11.96□□□□□ -0.49
SHMT2-212ENST00000554467 DLGAP2Q9P1A6 1054 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 SLC17A7Q9P2U7 560 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 PRKAG3Q9UGI9 489 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 SLC24A2Q9UI40 661 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 C5orf42Q9H799 3197 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.96□□□□□ -0.49
SHMT2-212ENST00000554467 OAZ2O95190 189 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 JCHAINP01591 159 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 CSH1P0DML2 217 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 CSH2P0DML3 217 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 CALB2P22676 271 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 PTPN3P26045 913 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 POLE2P56282 527 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 SCAPQ12770 1279 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 EFEMP1Q12805 493 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 SEMA5AQ13591 1074 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 MGAT5BQ3V5L5 792 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 ADGRD1Q6QNK2 874 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 TDRPQ86YL5 185 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 OR52K1Q8NGK4 314 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 SLC9A7Q96T83 725 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 CFHR5Q9BXR6 569 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 PITPNM3Q9BZ71 974 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 SLCO1B3Q9NPD5 702 aa11.96□□□□□ -0.49
SHMT2-212ENST00000554467 ZSCAN9O15535 394 aaPredicted RBP11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms