RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 PQLC3Q8N755 202 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.57□□□□□ -0.4
SHMT2-209ENST00000553949 OR52K2Q8NGK3 314 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 RNF157Q96PX1 679 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 TLR10Q9BXR5 811 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 MAK16Q9BXY0 300 aaKnown RBP12.57□□□□□ -0.4
SHMT2-209ENST00000553949 ETNK2Q9NVF9 386 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 GGA2Q9UJY4 613 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 JRKLQ9Y4A0 524 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 MFHAS1Q9Y4C4 1052 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 TICRRQ7Z2Z1 1910 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 MUC3AQ02505 3323 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 A0A0A0MRY4 1105 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 A0A0D9SEW6 157 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 ILVBLA1L0T0 632 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 TBC1D3BA6NDS4 549 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 RAMP2O60895 175 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 KAT7O95251 611 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 APODP05090 189 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 KRT10P13645 584 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 ALADP13716 330 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 MZF1P28698 734 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-209ENST00000553949 COPS2P61201 443 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 SIGLEC14Q08ET2 396 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 GRSF1Q12849 480 aaKnown RBP eCLIP12.56□□□□□ -0.4
SHMT2-209ENST00000553949 ZNF211Q13398 564 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-209ENST00000553949 SLC12A1Q13621 1099 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 LLGL1Q15334 1064 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 PPP2R5EQ16537 467 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 GEN1Q17RS7 908 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 TFDP3Q5H9I0 405 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 RNF219Q5W0B1 726 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-209ENST00000553949 NCBP2-AS2Q69YL0 99 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 FSTL4Q6MZW2 842 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 KIAA0907Q7Z7F0 614 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-209ENST00000553949 ADIPOR2Q86V24 386 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 RFX6Q8HWS3 928 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 SFTPA1Q8IWL2 248 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 AHI1Q8N157 1196 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 UMODL1-AS1Q8N2C9 162 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 LZTR1Q8N653 840 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 NPWQ8N729 165 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 TERB1Q8NA31 727 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-209ENST00000553949 ALG14Q96F25 216 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 FEM1AQ9BSK4 669 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 KLC2Q9H0B6 622 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 MUC3BQ9H195 1237 aa12.56□□□□□ -0.4
SHMT2-209ENST00000553949 NOL6Q9H6R4 1146 aaKnown RBP12.56□□□□□ -0.4
SHMT2-209ENST00000553949 hCG_1818297A0A087WSY0 165 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 KANSL1LA0AUZ9 987 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 PRRT4C9JH25 899 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 KCNK3O14649 394 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 EGFP01133 1207 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 ATP1A1P05023 1023 aaKnown RBP12.55□□□□□ -0.4
SHMT2-209ENST00000553949 DRD1P21728 446 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 PTPN7P35236 360 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 DEKP35659 375 aaKnown RBP12.55□□□□□ -0.4
SHMT2-209ENST00000553949 CETN2P41208 172 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 NDST2P52849 883 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 PLK1P53350 603 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 GNA12Q03113 381 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 TFDP2Q14188 446 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 DMC1Q14565 340 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 POLD3Q15054 466 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-209ENST00000553949 PAFAH1B3Q15102 231 aaKnown RBP12.55□□□□□ -0.4
SHMT2-209ENST00000553949 PLEKHG6Q3KR16 790 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 PARP15Q460N3 678 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 FUT11Q495W5 492 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 PITRM1Q5JRX3 1037 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 AFMIDQ63HM1 303 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 KAZNQ674X7 775 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 TMEM215Q68D42 235 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 SLC9A4Q6AI14 798 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 AADACL2Q6P093 401 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 TRIM67Q6ZTA4 783 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 NUDT18Q6ZVK8 323 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 APCDD1Q8J025 514 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 OR7D4Q8NG98 312 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 WFIKKN2Q8TEU8 576 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 EZH1Q92800 747 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-209ENST00000553949 CELF6Q96J87 481 aaKnown RBP12.55□□□□□ -0.4
SHMT2-209ENST00000553949 WDR24Q96S15 920 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 HEMGNQ9BXL5 484 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 OSBPL8Q9BZF1 889 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 MAGEH1Q9H213 219 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 CARD9Q9H257 536 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 LRRC19Q9H756 370 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 TBC1D17Q9HA65 648 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 PRDM16Q9HAZ2 1276 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 VPS28Q9UK41 221 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 INTS6Q9UL03 887 aaKnown RBP12.55□□□□□ -0.4
SHMT2-209ENST00000553949 NDRG2Q9UN36 371 aaKnown RBP12.55□□□□□ -0.4
SHMT2-209ENST00000553949 MRPS17Q9Y2R5 130 aaKnown RBP12.55□□□□□ -0.4
SHMT2-209ENST00000553949 OR51B4Q9Y5P0 310 aa12.55□□□□□ -0.4
SHMT2-209ENST00000553949 RASA4BC9J798 803 aa12.54□□□□□ -0.4
SHMT2-209ENST00000553949 K7EQS6 105 aa12.54□□□□□ -0.4
SHMT2-209ENST00000553949 APOL1O14791 398 aa12.54□□□□□ -0.4
SHMT2-209ENST00000553949 RASA4O43374 803 aa12.54□□□□□ -0.4
SHMT2-209ENST00000553949 TIMM44O43615 452 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms