RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 EEF1DP29692 281 aaKnown RBP6.17□□□□□ -1.42
SCFD1-208ENST00000553278 TTKP33981 857 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 MTNR1AP48039 350 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 CLCN2P51788 898 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 CDH8P55286 799 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 TPTEP56180 551 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 NXPH1P58417 271 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 GSTA3Q16772 222 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 VMACQ2NL98 169 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 GXYLT1Q4G148 440 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 GARNL3Q5VVW2 1013 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 GJB7Q6PEY0 223 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 SLC39A5Q6ZMH5 540 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 FAM47EQ6ZV65 393 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 PTCHD4Q6ZW05 846 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 CHST9Q7L1S5 443 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 GALNT7Q86SF2 657 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 BRSK2Q8IWQ3 736 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 SCML4Q8N228 414 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 PLD5Q8N7P1 536 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 POMGNT2Q8NAT1 580 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 TMEM116Q8NCL8 245 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 GABPB2Q8TAK5 448 aaPredicted RBP6.17□□□□□ -1.42
SCFD1-208ENST00000553278 NEK9Q8TD19 979 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 AFAP1L1Q8TED9 768 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 FKBP10Q96AY3 582 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 PRR25Q96S07 402 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 APOL6Q9BWW8 343 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 RETREG1Q9H6L5 497 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 ERVMER34-1Q9H9K5 563 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 GRPEL1Q9HAV7 217 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 SNX15Q9NRS6 342 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 PEMTQ9UBM1 199 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 CCNL1Q9UK58 526 aaPredicted RBP6.17□□□□□ -1.42
SCFD1-208ENST00000553278 ZFR2Q9UPR6 939 aaKnown RBP6.17□□□□□ -1.42
SCFD1-208ENST00000553278 GAGE12BA1L429 117 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 GAGE12HA6NDE8 117 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 EIF3CLB5ME19 914 aaKnown RBP6.16□□□□□ -1.42
SCFD1-208ENST00000553278 RNASET2O00584 256 aaKnown RBP6.16□□□□□ -1.42
SCFD1-208ENST00000553278 CES2O00748 559 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 ADAM20O43506 726 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 SCG2P13521 617 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 MCM3P25205 808 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 JAK3P52333 1124 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 OAZ1P54368 228 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 PDE1AP54750 535 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 UBXN2AP68543 259 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 NTRK2Q16620 822 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 KYNUQ16719 465 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 DPCR1Q3MIW9 517 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 ZNF667Q5HYK9 610 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 TCTN3Q6NUS6 607 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 Q6ZRM9 215 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 SLC46A3Q7Z3Q1 461 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 CHCHD4Q8N4Q1 142 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 C11orf65Q8NCR3 313 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 CADM4Q8NFZ8 388 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 ZNF653Q96CK0 615 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 MAP7D2Q96T17 732 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 ARHGEF3Q9NR81 526 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 MAP3K2Q9Y2U5 619 aa6.16□□□□□ -1.42
SCFD1-208ENST00000553278 AP4M1O00189 453 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 LDLRAD4O15165 306 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 CEP104O60308 925 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 ENTPD3O75355 529 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 C1RP00736 705 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 AFPP02771 609 aaKnown RBP6.15□□□□□ -1.42
SCFD1-208ENST00000553278 IL6RP08887 468 aaPredicted RBP6.15□□□□□ -1.42
SCFD1-208ENST00000553278 QDPRP09417 244 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 PKMP14618 531 aaKnown RBP6.15□□□□□ -1.42
SCFD1-208ENST00000553278 TBXAS1P24557 533 aaPredicted RBP6.15□□□□□ -1.42
SCFD1-208ENST00000553278 GSTM2P28161 218 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 SLC8A1P32418 973 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 MSH2P43246 934 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 TNNT3P45378 269 aaPredicted RBP6.15□□□□□ -1.42
SCFD1-208ENST00000553278 HNRNPMP52272 730 aaKnown RBP eCLIP6.15□□□□□ -1.42
SCFD1-208ENST00000553278 MRPL12P52815 198 aaKnown RBP6.15□□□□□ -1.42
SCFD1-208ENST00000553278 RAE1P78406 368 aaKnown RBP6.15□□□□□ -1.42
SCFD1-208ENST00000553278 JAG1P78504 1218 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 E2F1Q01094 437 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 ABHD18Q0P651 414 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 IL13RA2Q14627 380 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 IRF3Q14653 427 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 SLC18A3Q16572 532 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 CYP1B1Q16678 543 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 AP5B1Q2VPB7 878 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 CCDC92Q53HC0 331 aaPredicted RBP6.15□□□□□ -1.42
SCFD1-208ENST00000553278 TCP11X2Q5H9J9 407 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 NT5DC1Q5TFE4 455 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 NUGGCQ68CJ6 796 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 SLFN11Q7Z7L1 901 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 ZSCAN30Q86W11 494 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 TICAM1Q8IUC6 712 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 VPS52Q8N1B4 723 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 AVL9Q8NBF6 648 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 MAFAQ8NHW3 353 aaPredicted RBP6.15□□□□□ -1.42
SCFD1-208ENST00000553278 HDHD5Q9BXW7 423 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 SFXN1Q9H9B4 322 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 USP29Q9HBJ7 922 aa6.15□□□□□ -1.42
SCFD1-208ENST00000553278 ABHD10Q9NUJ1 306 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms