RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ASB14A6NK59 587 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 HACD1B0YJ81 288 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 EEF2KO00418 725 aaKnown RBP7.67□□□□□ -1.18
LIMA1-213ENST00000552720 PIRO00625 290 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 NEMP1O14524 444 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 NRP1O14786 923 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 OPHN1O60890 802 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 SNAI1O95863 264 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-213ENST00000552720 FYNP06241 537 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 CHRNGP07510 517 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 SMPD1P17405 629 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 SAT1P21673 171 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 PEX2P28328 305 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 CRABP2P29373 138 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 MSX2P35548 267 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-213ENST00000552720 GP5P40197 560 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 RPL34P49207 117 aaKnown RBP7.67□□□□□ -1.18
LIMA1-213ENST00000552720 GLUD2P49448 558 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 IRX1P78414 480 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-213ENST00000552720 PPP2R5DQ14738 602 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 TBCCQ15814 346 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 KYAT1Q16773 422 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 DCAF4L1Q3SXM0 396 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 STXBP5Q5T5C0 1151 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 TMCO4Q5TGY1 634 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 KIAA0319Q5VV43 1072 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 SMYD5Q6GMV2 418 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 ALKAL1Q6UXT8 129 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 PAQR9Q6ZVX9 377 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 ANKRD13AQ8IZ07 590 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 CRYBG2Q8N1P7 616 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 NPWQ8N729 165 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 LRRC52Q8N7C0 313 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 PPP4R1Q8TF05 950 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 RBBP8Q99708 897 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 KATNBL1Q9H079 304 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 SNX25Q9H3E2 840 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 WDR55Q9H6Y2 383 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-213ENST00000552720 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-213ENST00000552720 DDX43Q9NXZ2 648 aaKnown RBP7.67□□□□□ -1.18
LIMA1-213ENST00000552720 KLHL8Q9P2G9 620 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-213ENST00000552720 POMPQ9Y244 141 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 A0A096LPK6 155 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 ZCWPW2A0A1B0GU75 182 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 G3V2L1 256 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 TK2O00142 265 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 CXCL11O14625 94 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 PPP1R12AO14974 1030 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-213ENST00000552720 ZBTB24O43167 697 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-213ENST00000552720 GPR32O75388 356 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 KLHL2O95198 593 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 FESP07332 822 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 MMP3P08254 477 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 ERCC2P18074 760 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 PTPN3P26045 913 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 SERPINB5P36952 375 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 HARS2P49590 506 aaKnown RBP7.67□□□□□ -1.18
LIMA1-213ENST00000552720 AQP4P55087 323 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 POLE2P56282 527 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 MSLNQ13421 630 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-213ENST00000552720 ZRSR2Q15696 482 aaKnown RBP7.67□□□□□ -1.18
LIMA1-213ENST00000552720 EML3Q32P44 896 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 ZNF792Q3KQV3 632 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 PPM1LQ5SGD2 360 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 PGM2L1Q6PCE3 622 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 DHDDSQ86SQ9 333 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 DNAAF3Q8N9W5 541 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 ARRDC4Q8NCT1 418 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 OR6Y1Q8NGX8 325 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 POM121Q96HA1 1249 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 NPY6RQ99463 290 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 MLPHQ9BV36 600 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-213ENST00000552720 UNKQ9C0B0 810 aaKnown RBP7.67□□□□□ -1.18
LIMA1-213ENST00000552720 PLEKHA5Q9HAU0 1116 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 GPAMQ9HCL2 828 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 CHRAC1Q9NRG0 131 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 PAPOLBQ9NRJ5 636 aaKnown RBP7.67□□□□□ -1.18
LIMA1-213ENST00000552720 SPATS2LQ9NUQ6 558 aaKnown RBP7.67□□□□□ -1.18
LIMA1-213ENST00000552720 DNAJC28Q9NX36 388 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 KCNH4Q9UQ05 1017 aa7.67□□□□□ -1.18
LIMA1-213ENST00000552720 COL1A2P08123 1366 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 DCLK1O15075 740 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 CCNT2O60583 730 aaKnown RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 STK10O94804 968 aaKnown RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 HSPA4LO95757 839 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 ALOX15P16050 662 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 GRK2P25098 689 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 MPSTP25325 297 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 CD68P34810 354 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 AVPR1AP37288 418 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 GLRBP48167 497 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 MAP3K7CLP57077 242 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 SNX16P57768 344 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 DEUP1Q05D60 604 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 TBL3Q12788 808 aaKnown RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 ZBTB17Q13105 803 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 DPYSQ14117 519 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 PDK1Q15118 436 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 FAM219BQ5XKK7 198 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 SLC30A9Q6PML9 568 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms