RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 OXR1Q8N573 874 aa18.42■□□□□ 0.54
CLSTN3-214ENST00000542663 DCBLD1Q8N8Z6 715 aa18.42■□□□□ 0.54
CLSTN3-214ENST00000542663 MFSD2AQ8NA29 543 aa18.42■□□□□ 0.54
CLSTN3-214ENST00000542663 DQX1Q8TE96 717 aaKnown RBP18.42■□□□□ 0.54
CLSTN3-214ENST00000542663 SNX21Q969T3 373 aa18.42■□□□□ 0.54
CLSTN3-214ENST00000542663 DDX50Q9BQ39 737 aaKnown RBP18.42■□□□□ 0.54
CLSTN3-214ENST00000542663 CLCA2Q9UQC9 943 aa18.42■□□□□ 0.54
CLSTN3-214ENST00000542663 TLR6Q9Y2C9 796 aa18.42■□□□□ 0.54
CLSTN3-214ENST00000542663 TBC1D3DA0A087WVF3 549 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 TBC1D3IA0A087WXS9 549 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 TBC1D3EA0A087X179 549 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 TBC1D3KA0A087X1G2 549 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 TEX51A0A1B0GUA7 166 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 TBC1D3FA6NER0 549 aaPredicted RBP18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 TBC1D3LB9A6J9 549 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 RNF225M0QZC1 329 aaPredicted RBP18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 CETN3O15182 167 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 CALCAP01258 141 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 IL1BP01584 269 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 CENPBP07199 599 aaPredicted RBP18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 PAEPP09466 180 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 TBC1D3HP0C7X1 549 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 GLDCP23378 1020 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 NUMBP49757 651 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 CCDC173Q0VFZ6 552 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 LRMPQ12912 555 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 TBC1D25Q3MII6 688 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 TBC1D3GQ6DHY5 549 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 TBC1D3CQ6IPX1 549 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 TMEM270Q6UE05 265 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 SPACA3Q8IXA5 215 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 TBC1D3Q8IZP1 549 aaPredicted RBP18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 SERPINB11Q96P15 392 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 CYTH4Q9UIA0 394 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 TPX2Q9ULW0 747 aaKnown RBP18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 NAALADL1Q9UQQ1 740 aa18.41■□□□□ 0.54
CLSTN3-214ENST00000542663 COL6A6A6NMZ7 2263 aa18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 M0QYV0 167 aa18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 SDC3O75056 442 aa18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 RTN2O75298 545 aa18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 MOCS3O95396 460 aa18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 MOCS2O96007 188 aaPredicted RBP18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 BRD2P25440 801 aaKnown RBP18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 MAT2AP31153 395 aaKnown RBP18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 ACTN2P35609 894 aa18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 NNTQ13423 1086 aa18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 ELAVL3Q14576 367 aaKnown RBP18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 CNGA2Q16280 664 aa18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 ZNF605Q86T29 641 aa18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 IQCHQ86VS3 1027 aa18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 LGI2Q8N0V4 545 aa18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 SLC35C1Q96A29 364 aa18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 SPATA32Q96LK8 384 aa18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 MIS12Q9H081 205 aa18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 SARDHQ9UL12 918 aa18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 CEP83Q9Y592 693 aa18.4■□□□□ 0.54
CLSTN3-214ENST00000542663 TRIM38O00635 465 aa18.39■□□□□ 0.53
CLSTN3-214ENST00000542663 PLRG1O43660 514 aaKnown RBP18.39■□□□□ 0.53
CLSTN3-214ENST00000542663 SIGLEC6O43699 453 aa18.39■□□□□ 0.53
CLSTN3-214ENST00000542663 FBXO21O94952 628 aa18.39■□□□□ 0.53
CLSTN3-214ENST00000542663 TBXAS1P24557 533 aaPredicted RBP18.39■□□□□ 0.53
CLSTN3-214ENST00000542663 CXADRP78310 365 aa18.39■□□□□ 0.53
CLSTN3-214ENST00000542663 SYPL2Q5VXT5 272 aa18.39■□□□□ 0.53
CLSTN3-214ENST00000542663 RNF219Q5W0B1 726 aaPredicted RBP18.39■□□□□ 0.53
CLSTN3-214ENST00000542663 RAP1GAP2Q684P5 730 aa18.39■□□□□ 0.53
CLSTN3-214ENST00000542663 PRPF39Q86UA1 669 aaKnown RBP18.39■□□□□ 0.53
CLSTN3-214ENST00000542663 TAC4Q86UU9 113 aa18.39■□□□□ 0.53
CLSTN3-214ENST00000542663 CCDC117Q8IWD4 279 aaPredicted RBP18.39■□□□□ 0.53
CLSTN3-214ENST00000542663 SLC25A45Q8N413 288 aa18.39■□□□□ 0.53
CLSTN3-214ENST00000542663 FRS2Q8WU20 508 aa18.39■□□□□ 0.53
CLSTN3-214ENST00000542663 HSFY1Q96LI6 401 aa18.39■□□□□ 0.53
CLSTN3-214ENST00000542663 GOLPH3LQ9H4A5 285 aa18.39■□□□□ 0.53
CLSTN3-214ENST00000542663 TRPM6Q9BX84 2022 aa18.39■□□□□ 0.53
CLSTN3-214ENST00000542663 SLC16A3O15427 465 aaKnown RBP18.38■□□□□ 0.53
CLSTN3-214ENST00000542663 TACR2P21452 398 aa18.38■□□□□ 0.53
CLSTN3-214ENST00000542663 PRCPP42785 496 aa18.38■□□□□ 0.53
CLSTN3-214ENST00000542663 RPL34P49207 117 aaKnown RBP18.38■□□□□ 0.53
CLSTN3-214ENST00000542663 PMS1P54277 932 aaKnown RBP18.38■□□□□ 0.53
CLSTN3-214ENST00000542663 AGBL4Q5VU57 503 aa18.38■□□□□ 0.53
CLSTN3-214ENST00000542663 KDM7AQ6ZMT4 941 aa18.38■□□□□ 0.53
CLSTN3-214ENST00000542663 TRIM69Q86WT6 500 aa18.38■□□□□ 0.53
CLSTN3-214ENST00000542663 KAT5Q92993 513 aa18.38■□□□□ 0.53
CLSTN3-214ENST00000542663 SPAG5Q96R06 1193 aa18.38■□□□□ 0.53
CLSTN3-214ENST00000542663 KDM4CQ9H3R0 1056 aa18.38■□□□□ 0.53
CLSTN3-214ENST00000542663 CAAP1Q9H8G2 361 aa18.38■□□□□ 0.53
CLSTN3-214ENST00000542663 CA5BQ9Y2D0 317 aa18.38■□□□□ 0.53
CLSTN3-214ENST00000542663 PCDHB4Q9Y5E5 795 aa18.38■□□□□ 0.53
CLSTN3-214ENST00000542663 PCDHB1Q9Y5F3 818 aa18.38■□□□□ 0.53
CLSTN3-214ENST00000542663 KIF26BQ2KJY2 2108 aa18.37■□□□□ 0.53
CLSTN3-214ENST00000542663 CAPN9O14815 690 aa18.37■□□□□ 0.53
CLSTN3-214ENST00000542663 CFHR1Q03591 330 aa18.37■□□□□ 0.53
CLSTN3-214ENST00000542663 CNTN1Q12860 1018 aa18.37■□□□□ 0.53
CLSTN3-214ENST00000542663 OVGP1Q12889 678 aa18.37■□□□□ 0.53
CLSTN3-214ENST00000542663 ZNF211Q13398 564 aaPredicted RBP18.37■□□□□ 0.53
CLSTN3-214ENST00000542663 STILQ15468 1287 aa18.37■□□□□ 0.53
CLSTN3-214ENST00000542663 DMTF1Q9Y222 760 aa18.37■□□□□ 0.53
CLSTN3-214ENST00000542663 DOCK4Q8N1I0 1966 aa18.37■□□□□ 0.53
CLSTN3-214ENST00000542663 SLC7A4O43246 635 aa18.36■□□□□ 0.53
CLSTN3-214ENST00000542663 MAGEC1O60732 1142 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms