RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 KCNF1Q9H3M0 494 aa12.4□□□□□ -0.42
CHD4-203ENST00000535717 RETREG1Q9H6L5 497 aa12.4□□□□□ -0.42
CHD4-203ENST00000535717 PCDH18Q9HCL0 1135 aa12.4□□□□□ -0.42
CHD4-203ENST00000535717 NDFIP2Q9NV92 336 aa12.4□□□□□ -0.42
CHD4-203ENST00000535717 TMEM248Q9NWD8 314 aa12.4□□□□□ -0.42
CHD4-203ENST00000535717 C2orf42Q9NWW7 574 aa12.4□□□□□ -0.42
CHD4-203ENST00000535717 CWC15Q9P013 229 aaKnown RBP12.4□□□□□ -0.42
CHD4-203ENST00000535717 OR51B4Q9Y5P0 310 aa12.4□□□□□ -0.42
CHD4-203ENST00000535717 ALG6Q9Y672 507 aa12.4□□□□□ -0.42
CHD4-203ENST00000535717 MACROD2A1Z1Q3 448 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 CHURC1-FNTBB4DL54 471 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 KLF8O95600 359 aaPredicted RBP12.39□□□□□ -0.43
CHD4-203ENST00000535717 RHOCP08134 193 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 HNRNPLP14866 589 aaKnown RBP eCLIP12.39□□□□□ -0.43
CHD4-203ENST00000535717 POLR2EP19388 210 aaKnown RBP12.39□□□□□ -0.43
CHD4-203ENST00000535717 HTR7P34969 479 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 HCAR3P49019 387 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 NUMBP49757 651 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 ARSEP51690 589 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 PLK1P53350 603 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 NAP1L1P55209 391 aaKnown RBP12.39□□□□□ -0.43
CHD4-203ENST00000535717 OXCT1P55809 520 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 SLC12A1Q13621 1099 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 DMC1Q14565 340 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 EIF4HQ15056 248 aaKnown RBP12.39□□□□□ -0.43
CHD4-203ENST00000535717 PLEKHG6Q3KR16 790 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 C6orf118Q5T5N4 469 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 C11orf63Q6NUN7 778 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 RFX8Q6ZV50 586 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 POLNQ7Z5Q5 900 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 SPEM1Q8N4L4 309 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 CCDC33Q8N5R6 958 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 ZNF513Q8N8E2 541 aaPredicted RBP12.39□□□□□ -0.43
CHD4-203ENST00000535717 RTL3Q8N8U3 475 aaKnown RBP12.39□□□□□ -0.43
CHD4-203ENST00000535717 CCDC26Q8TAB7 109 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 FAM71BQ8TC56 605 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 KCNV2Q8TDN2 545 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 CYB5D2Q8WUJ1 264 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 TSC1Q92574 1164 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 TTC17Q96AE7 1141 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 CALR3Q96L12 384 aaKnown RBP12.39□□□□□ -0.43
CHD4-203ENST00000535717 ACOX2Q99424 681 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 IER2Q9BTL4 223 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 POLR3BQ9NW08 1133 aaPredicted RBP12.39□□□□□ -0.43
CHD4-203ENST00000535717 SPATA6Q9NWH7 488 aaPredicted RBP12.39□□□□□ -0.43
CHD4-203ENST00000535717 DNAI1Q9UI46 699 aa12.39□□□□□ -0.43
CHD4-203ENST00000535717 MYO18AQ92614 2054 aaKnown RBP12.39□□□□□ -0.43
CHD4-203ENST00000535717 A0A0D9SEW6 157 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 ILVBLA1L0T0 632 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 WASH4PA8MWX3 477 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 H3BRJ5 948 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 SGK1O00141 431 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 FGF10O15520 208 aaPredicted RBP12.38□□□□□ -0.43
CHD4-203ENST00000535717 SPOPO43791 374 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 ADAM23O75077 832 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 ATG13O75143 517 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 MOCS3O95396 460 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 KRT7P08729 469 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 CD48P09326 243 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 CCDC175P0C221 793 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 TNNT1P13805 278 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 IL4RP24394 825 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 CTSOP43234 321 aaPredicted RBP12.38□□□□□ -0.43
CHD4-203ENST00000535717 MAPKAPK2P49137 400 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 ZNF135P52742 658 aaPredicted RBP12.38□□□□□ -0.43
CHD4-203ENST00000535717 CDH6P55285 790 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 MMRN1Q13201 1228 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 DPYSQ14117 519 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 KRT81Q14533 505 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 PTPRNQ16849 979 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 LRRC38Q5VT99 294 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 ZNF783Q6ZMS7 281 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 MAMSTRQ6ZN01 415 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 DAAM2Q86T65 1068 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 LRRC57Q8N9N7 239 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 TXNDC5Q8NBS9 432 aaKnown RBP12.38□□□□□ -0.43
CHD4-203ENST00000535717 UCMAQ8WVF2 138 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 CSPG4P5Q96PW8 444 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 PPP1R9BQ96SB3 815 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 MUC3BQ9H195 1237 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 NOL6Q9H6R4 1146 aaKnown RBP12.38□□□□□ -0.43
CHD4-203ENST00000535717 CATSPERBQ9H7T0 1116 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 KLHL11Q9NVR0 708 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 CACNA2D2Q9NY47 1150 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 THAP10Q9P2Z0 257 aaPredicted RBP12.38□□□□□ -0.43
CHD4-203ENST00000535717 CACNA1IQ9P0X4 2223 aa12.38□□□□□ -0.43
CHD4-203ENST00000535717 GRID2IPA4D2P6 1211 aa12.37□□□□□ -0.43
CHD4-203ENST00000535717 WASH3PC4AMC7 463 aa12.37□□□□□ -0.43
CHD4-203ENST00000535717 DAPK3O43293 454 aa12.37□□□□□ -0.43
CHD4-203ENST00000535717 ATP5BP06576 529 aaKnown RBP12.37□□□□□ -0.43
CHD4-203ENST00000535717 DLDP09622 509 aaKnown RBP12.37□□□□□ -0.43
CHD4-203ENST00000535717 ERCC2P18074 760 aa12.37□□□□□ -0.43
CHD4-203ENST00000535717 NTSR1P30989 418 aa12.37□□□□□ -0.43
CHD4-203ENST00000535717 ARL4AP40617 200 aa12.37□□□□□ -0.43
CHD4-203ENST00000535717 WASP42768 502 aa12.37□□□□□ -0.43
CHD4-203ENST00000535717 CXCL12P48061 93 aa12.37□□□□□ -0.43
CHD4-203ENST00000535717 ECT2LQ008S8 904 aa12.37□□□□□ -0.43
CHD4-203ENST00000535717 SATB1Q01826 763 aa12.37□□□□□ -0.43
CHD4-203ENST00000535717 GNA12Q03113 381 aa12.37□□□□□ -0.43
CHD4-203ENST00000535717 CCDC173Q0VFZ6 552 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms