RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 PADI3Q9ULW8 664 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 AAR2Q9Y312 384 aaKnown RBP15.19■□□□□ 0.02
NUP54-217ENST00000514987 ZNF638Q14966 1978 aaKnown RBP15.19■□□□□ 0.02
NUP54-217ENST00000514987 ARHGAP42A6NI28 874 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 B3GAT3O94766 335 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 IGLV3-25P01717 112 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 PROCP04070 461 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 IGFBP6P24592 240 aaPredicted RBP15.19■□□□□ 0.02
NUP54-217ENST00000514987 CCNCP24863 283 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 LIMK2P53671 638 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 CACNA2D1P54289 1103 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 TSPY1Q01534 308 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 SREBF2Q12772 1141 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 ARMC3Q5W041 872 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 MBLAC2Q68D91 279 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 C4orf50Q6ZRC1 276 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 LCA5Q86VQ0 697 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 UNC5BQ8IZJ1 945 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 ENDOVQ8N8Q3 282 aaKnown RBP15.19■□□□□ 0.02
NUP54-217ENST00000514987 EDEM1Q92611 657 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 MCUR1Q96AQ8 359 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 ZNF669Q96BR6 464 aaPredicted RBP15.19■□□□□ 0.02
NUP54-217ENST00000514987 PKMYT1Q99640 499 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 ANLNQ9NQW6 1124 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 ABCC13Q9NSE7 274 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 TMEM30AQ9NV96 361 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 ARHGEF38Q9NXL2 777 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 MID2Q9UJV3 735 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 SQORQ9Y6N5 450 aa15.19■□□□□ 0.02
NUP54-217ENST00000514987 MYO18AQ92614 2054 aaKnown RBP15.19■□□□□ 0.02
NUP54-217ENST00000514987 CCDC195A0A1B0GUA6 201 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 I6L893 689 aaPredicted RBP15.18■□□□□ 0.02
NUP54-217ENST00000514987 GSC2O15499 205 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 SEPT4O43236 478 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 H2AFYO75367 372 aaKnown RBP15.18■□□□□ 0.02
NUP54-217ENST00000514987 LRIG2O94898 1065 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 SERPINA6P08185 405 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 ERVK-10P10266 1014 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 MYL4P12829 197 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 THPOP40225 353 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 AQP5P55064 265 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 FCGRTP55899 365 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 CDH17Q12864 832 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 OVOS1Q6IE37 1185 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 TAC4Q86UU9 113 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 LRRC49Q8IUZ0 686 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 CCDC117Q8IWD4 279 aaPredicted RBP15.18■□□□□ 0.02
NUP54-217ENST00000514987 NPWQ8N729 165 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 PIWIL2Q8TC59 973 aaKnown RBP15.18■□□□□ 0.02
NUP54-217ENST00000514987 DQX1Q8TE96 717 aaKnown RBP15.18■□□□□ 0.02
NUP54-217ENST00000514987 RSPH1Q8WYR4 309 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 AGAP3Q96P47 875 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 GORASP1Q9BQQ3 440 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 CADM1Q9BY67 442 aaKnown RBP15.18■□□□□ 0.02
NUP54-217ENST00000514987 CATSPERBQ9H7T0 1116 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 DCLRE1BQ9H816 532 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 YY1AP1Q9H869 796 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 AGO3Q9H9G7 860 aaKnown RBP15.18■□□□□ 0.02
NUP54-217ENST00000514987 FBXO6Q9NRD1 293 aaPredicted RBP15.18■□□□□ 0.02
NUP54-217ENST00000514987 FNIP2Q9P278 1114 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 PPARGC1AQ9UBK2 798 aaKnown RBP15.18■□□□□ 0.02
NUP54-217ENST00000514987 CACNG4Q9UBN1 327 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 EMCNQ9ULC0 261 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 SOX13Q9UN79 622 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 L3MBTL1Q9Y468 752 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 NUMBLQ9Y6R0 609 aa15.18■□□□□ 0.02
NUP54-217ENST00000514987 VGLL3A8MV65 326 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 CAPN14A8MX76 684 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 INPPL1O15357 1258 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 CACNG3O60359 315 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 PEX11AO75192 247 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 ANXA9O76027 345 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 GSRP00390 522 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 APOA4P06727 396 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 FGF3P11487 239 aaPredicted RBP15.17■□□□□ 0.02
NUP54-217ENST00000514987 NFKB1P19838 968 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 BDNFP23560 247 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 DNAJB1P25685 340 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 CD68P34810 354 aaPredicted RBP15.17■□□□□ 0.02
NUP54-217ENST00000514987 SLC1A6P48664 564 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 AFF1P51825 1210 aaKnown RBP15.17■□□□□ 0.02
NUP54-217ENST00000514987 TEDDM1Q5T9Z0 273 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 STRA8Q7Z7C7 330 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 TMPRSS6Q8IU80 811 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 TP53INP2Q8IXH6 220 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 SUSD3Q96L08 255 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 FCRL3Q96P31 734 aaPredicted RBP15.17■□□□□ 0.02
NUP54-217ENST00000514987 NUDCD1Q96RS6 583 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 NMUR2Q9GZQ4 415 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 PSAT1Q9Y617 370 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 PATJQ8NI35 1801 aa15.17■□□□□ 0.02
NUP54-217ENST00000514987 ZCWPW2A0A1B0GU75 182 aa15.16■□□□□ 0.02
NUP54-217ENST00000514987 PGK1P00558 417 aa15.16■□□□□ 0.02
NUP54-217ENST00000514987 JCHAINP01591 159 aa15.16■□□□□ 0.02
NUP54-217ENST00000514987 SLC10A3P09131 477 aa15.16■□□□□ 0.02
NUP54-217ENST00000514987 HOXC13P31276 330 aa15.16■□□□□ 0.02
NUP54-217ENST00000514987 CD52P31358 61 aa15.16■□□□□ 0.02
NUP54-217ENST00000514987 POLD2P49005 469 aa15.16■□□□□ 0.02
NUP54-217ENST00000514987 ZBTB17Q13105 803 aa15.16■□□□□ 0.02
NUP54-217ENST00000514987 EIF4EBP2Q13542 120 aaPredicted RBP15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms