RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 ZNF671Q8TAW3 534 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 HIST1H2AHQ96KK5 128 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 FAM84BQ96KN1 310 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 HIST1H2AJQ99878 128 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 H2AFJQ9BTM1 129 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 AASDHPPTQ9NRN7 309 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 SNX8Q9Y5X2 465 aa8.89□□□□□ -0.99
LIMCH1-218ENST00000513024 MT-CO1P00395 513 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 PRIM2P49643 509 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 GDI2P50395 445 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 MSANTD1Q6ZTZ1 278 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 PROSER1Q86XN7 944 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 ZDHHC13Q8IUH4 622 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 OR8H3Q8N146 312 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 CYP4Z2PQ8N1L4 340 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 MEIOBQ8N635 442 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 TOR1AIP2Q8NFQ8 470 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 MCFD2Q8NI22 146 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 ACTRT1Q8TDG2 376 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 ARMCX1Q9P291 453 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 ZNF70Q9UC06 446 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 SIK3Q9Y2K2 1263 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 DPPA5A6NC42 116 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 PRMT3O60678 531 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 FLT1P17948 1338 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 PON1P27169 355 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 NAMPTP43490 491 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 MAZP56270 477 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 LSM3P62310 102 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 ZNF844Q08AG5 666 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 SEL1L3Q68CR1 1132 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 PDPK2PQ6A1A2 396 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 POU5F2Q8N7G0 328 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 C1orf131Q8NDD1 294 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 UBA3Q8TBC4 463 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 SPIRE2Q8WWL2 714 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 LOC110117498-PIK3R3F6TDL0 507 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 CXCL11O14625 94 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 GLRA3O75311 464 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 H2AFYO75367 372 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 PPM1BO75688 479 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 AVPR1AP37288 418 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 XIAPP98170 497 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 ELAVL2Q12926 359 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 MSLNQ13421 630 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 BMPR2Q13873 1038 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 CARTPTQ16568 116 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 ALFQ53S48 1182 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 CCDC185Q8N715 623 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 SNX31Q8N9S9 440 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 TMIEQ8NEW7 156 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 PYDC1Q8WXC3 89 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 TNIP3Q96KP6 325 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 CHCHD6Q9BRQ6 235 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 RIOK2Q9BVS4 552 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 KCTD10Q9H3F6 313 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 PSMD11O00231 422 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 EEF2KO00418 725 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 TEX28O15482 410 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 XYLBO75191 536 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 ATP5BP06576 529 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 RPL10AP62906 217 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 ENPEPQ07075 957 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 PLD1Q13393 1074 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 PLA2G4FQ68DD2 849 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 DDX53Q86TM3 631 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 ATPAF2Q8N5M1 289 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 NAT14Q8WUY8 206 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 SEPHS2Q99611 448 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 CLK4Q9HAZ1 481 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 PTTG2Q9NZH5 202 aa8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 MRPS7Q9Y2R9 242 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-218ENST00000513024 HS6ST1O60243 411 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 SGPL1O95470 568 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 PGK1P00558 417 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 SERPIND1P05546 499 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 MLNP12872 115 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 TGM2P21980 687 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 ERVK-9P63128 1117 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 NRF1Q16656 503 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 CYP51A1Q16850 503 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 ERMARDQ5T6L9 678 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 GARNL3Q5VVW2 1013 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 MAP1SQ66K74 1059 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 TTI2Q6NXR4 508 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 DUS1LQ6P1R4 473 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 CEP68Q76N32 757 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 DHDDSQ86SQ9 333 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 ZNF605Q86T29 641 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 SAPCD2Q86UD0 394 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 MIER2Q8N344 545 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 TSEN2Q8NCE0 465 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 TRPV1Q8NER1 839 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 CSGALNACT1Q8TDX6 532 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 TMEM121Q9BTD3 319 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 AGXT2Q9BYV1 514 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 FRMD8Q9BZ67 464 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 PIF1Q9H611 641 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms