RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 C3orf70A6NLC5 250 aaPredicted RBP3.16□□□□□ -1.9
NUP54-208ENST00000508604 A6NNZ2 444 aa3.16□□□□□ -1.9
NUP54-208ENST00000508604 I6L893 689 aaPredicted RBP3.16□□□□□ -1.9
NUP54-208ENST00000508604 M0QZQ0 153 aa3.16□□□□□ -1.9
NUP54-208ENST00000508604 ALDOCP09972 364 aaKnown RBP3.16□□□□□ -1.9
NUP54-208ENST00000508604 TUBA1BP68363 451 aa3.16□□□□□ -1.9
NUP54-208ENST00000508604 SHC2P98077 582 aa3.16□□□□□ -1.9
NUP54-208ENST00000508604 FAM102BQ5T8I3 360 aa3.16□□□□□ -1.9
NUP54-208ENST00000508604 ADAM5Q6NVV9 412 aa3.16□□□□□ -1.9
NUP54-208ENST00000508604 AAGABQ6PD74 315 aa3.16□□□□□ -1.9
NUP54-208ENST00000508604 EXOC3L1Q86VI1 746 aa3.16□□□□□ -1.9
NUP54-208ENST00000508604 ADGRF3Q8IZF5 1079 aa3.16□□□□□ -1.9
NUP54-208ENST00000508604 ATP11CQ8NB49 1132 aa3.16□□□□□ -1.9
NUP54-208ENST00000508604 SPRY4Q9C004 299 aa3.16□□□□□ -1.9
NUP54-208ENST00000508604 ZMYND8Q9ULU4 1186 aaPredicted RBP3.16□□□□□ -1.9
NUP54-208ENST00000508604 MMP24Q9Y5R2 645 aa3.16□□□□□ -1.9
NUP54-208ENST00000508604 hCG_2014768A0A024R1R8 64 aa3.15□□□□□ -1.9
NUP54-208ENST00000508604 OR2W5A6NFC9 320 aa3.15□□□□□ -1.9
NUP54-208ENST00000508604 STMND1H3BQB6 276 aa3.15□□□□□ -1.9
NUP54-208ENST00000508604 KAT7O95251 611 aa3.15□□□□□ -1.9
NUP54-208ENST00000508604 GM2AP17900 193 aa3.15□□□□□ -1.9
NUP54-208ENST00000508604 TNFSF8P32971 234 aa3.15□□□□□ -1.9
NUP54-208ENST00000508604 NUDT6P53370 316 aa3.15□□□□□ -1.9
NUP54-208ENST00000508604 PMS2P54278 862 aa3.15□□□□□ -1.9
NUP54-208ENST00000508604 DUSP6Q16828 381 aa3.15□□□□□ -1.9
NUP54-208ENST00000508604 SLC5A9Q2M3M2 681 aa3.15□□□□□ -1.9
NUP54-208ENST00000508604 PMS2CLQ68D20 193 aa3.15□□□□□ -1.9
NUP54-208ENST00000508604 HIST2H2BCQ6DN03 193 aa3.15□□□□□ -1.9
NUP54-208ENST00000508604 Q6ZSV7 163 aa3.15□□□□□ -1.9
NUP54-208ENST00000508604 CCDC25Q86WR0 208 aa3.15□□□□□ -1.9
NUP54-208ENST00000508604 KLBQ86Z14 1044 aa3.15□□□□□ -1.9
NUP54-208ENST00000508604 KDM1BQ8NB78 822 aa3.15□□□□□ -1.9
NUP54-208ENST00000508604 NPIPB3Q92617 1050 aa3.15□□□□□ -1.9
NUP54-208ENST00000508604 ZNF333Q96JL9 665 aa3.15□□□□□ -1.9
NUP54-208ENST00000508604 OSBPL5Q9H0X9 879 aaPredicted RBP3.15□□□□□ -1.9
NUP54-208ENST00000508604 KCNJ18B7U540 433 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 BMPR1BO00238 502 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 AMTP48728 403 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 KRTAP10-12P60413 245 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 NSUN2Q08J23 767 aaKnown RBP eCLIP3.14□□□□□ -1.91
NUP54-208ENST00000508604 CCDC6Q16204 474 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 EFHC1Q5JVL4 640 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 KIAA0408Q6ZU52 694 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 LMNTD1Q8N9Z9 388 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 PHKBQ93100 1093 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 APOLD1Q96LR9 279 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 IL21RQ9HBE5 538 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 TXNRD2Q9NNW7 524 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 OCIAD1Q9NX40 245 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 SRPRBQ9Y5M8 271 aaKnown RBP3.14□□□□□ -1.91
NUP54-208ENST00000508604 ANTXRLA6NF34 631 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 ERI2A8K979 691 aaKnown RBP3.14□□□□□ -1.91
NUP54-208ENST00000508604 RHPN2P1A8MT19 583 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 SERPINI2O75830 405 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 ZNF12P17014 697 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 KLRC2P26717 231 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 RBM39Q14498 530 aaKnown RBP3.14□□□□□ -1.91
NUP54-208ENST00000508604 SF3B4Q15427 424 aaKnown RBP eCLIP3.14□□□□□ -1.912e-6■■□□□ 13.6
NUP54-208ENST00000508604 ARHGAP15Q53QZ3 475 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 RAP1GAP2Q684P5 730 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 ANKRD40Q6AI12 368 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 ZNF449Q6P9G9 518 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 CHST15Q7LFX5 561 aaPredicted RBP3.14□□□□□ -1.91
NUP54-208ENST00000508604 RASGRP3Q8IV61 690 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 SLC22A17Q8WUG5 538 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 IP6K1Q92551 441 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 PAAF1Q9BRP4 392 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 EIF2AQ9BY44 585 aaKnown RBP3.14□□□□□ -1.91
NUP54-208ENST00000508604 ZNF304Q9HCX3 659 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 KCNK9Q9NPC2 374 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 PRDM11Q9NQV5 511 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 DONSONQ9NYP3 566 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 CORO2BQ9UQ03 480 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 RAP2CQ9Y3L5 183 aa3.14□□□□□ -1.91
NUP54-208ENST00000508604 PNMA6EA0A0J9YXQ4 647 aa3.13□□□□□ -1.91
NUP54-208ENST00000508604 NKX2-8O15522 239 aa3.13□□□□□ -1.91
NUP54-208ENST00000508604 NAGAP17050 411 aa3.13□□□□□ -1.91
NUP54-208ENST00000508604 AVPR1AP37288 418 aa3.13□□□□□ -1.91
NUP54-208ENST00000508604 TLE3Q04726 772 aa3.13□□□□□ -1.91
NUP54-208ENST00000508604 SEMA5AQ13591 1074 aa3.13□□□□□ -1.91
NUP54-208ENST00000508604 HEPHL1Q6MZM0 1159 aa3.13□□□□□ -1.91
NUP54-208ENST00000508604 MSANTD2Q6P1R3 559 aa3.13□□□□□ -1.91
NUP54-208ENST00000508604 DCUN1D3Q8IWE4 304 aa3.13□□□□□ -1.91
NUP54-208ENST00000508604 CCDC33Q8N5R6 958 aa3.13□□□□□ -1.91
NUP54-208ENST00000508604 MAGEB6Q8N7X4 407 aa3.13□□□□□ -1.91
NUP54-208ENST00000508604 LRRC57Q8N9N7 239 aa3.13□□□□□ -1.91
NUP54-208ENST00000508604 CMASQ8NFW8 434 aaPredicted RBP3.13□□□□□ -1.91
NUP54-208ENST00000508604 SLC35F5Q8WV83 523 aa3.13□□□□□ -1.91
NUP54-208ENST00000508604 GFM1Q96RP9 751 aaKnown RBP3.13□□□□□ -1.91
NUP54-208ENST00000508604 ABHD16BQ9H3Z7 469 aa3.13□□□□□ -1.91
NUP54-208ENST00000508604 GXYLT2A0PJZ3 443 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 GOLGA6CA6NDK9 693 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 GOLGA6BA6NDN3 693 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 MCIDASD6RGH6 385 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 J3KTA2 159 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 LMX1BO60663 402 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 GOLGA6DP0CG33 693 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 PECAM1P16284 738 aaPredicted RBP3.12□□□□□ -1.91
NUP54-208ENST00000508604 EGR1P18146 543 aa3.12□□□□□ -1.91
NUP54-208ENST00000508604 FGFR2P21802 821 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms