RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 CFAP52Q8N1V2 620 aa21.71■■□□□ 1.07
SQSTM1-210ENST00000506042 MFSD2AQ8NA29 543 aa21.71■■□□□ 1.07
SQSTM1-210ENST00000506042 EHBP1Q8NDI1 1231 aa21.71■■□□□ 1.07
SQSTM1-210ENST00000506042 CLEC4CQ8WTT0 213 aa21.71■■□□□ 1.07
SQSTM1-210ENST00000506042 MYO19Q96H55 970 aa21.71■■□□□ 1.07
SQSTM1-210ENST00000506042 MRGPRX3Q96LB0 322 aa21.71■■□□□ 1.07
SQSTM1-210ENST00000506042 FAM204AQ9H8W3 233 aa21.71■■□□□ 1.07
SQSTM1-210ENST00000506042 GDPD2Q9HCC8 539 aa21.71■■□□□ 1.07
SQSTM1-210ENST00000506042 NAALADL1Q9UQQ1 740 aa21.71■■□□□ 1.07
SQSTM1-210ENST00000506042 AK5Q9Y6K8 562 aa21.71■■□□□ 1.07
SQSTM1-210ENST00000506042 ATRXP46100 2492 aa21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 TTC34A8MYJ7 566 aa21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 KCNU1A8MYU2 1149 aa21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 TLR4O00206 839 aa21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 ALOX15BO15296 676 aa21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 TRUB2O95900 331 aaKnown RBP21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 AFPP02771 609 aaKnown RBP21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 GLI1P08151 1106 aa21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 MZF1P28698 734 aaPredicted RBP21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 ACCSLQ4AC99 568 aa21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 RAP1GAP2Q684P5 730 aa21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 KLHL10Q6JEL2 608 aa21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 TAC4Q86UU9 113 aa21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 ELOA2Q8IYF1 753 aaPredicted RBP21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 SPATA20Q8TB22 786 aa21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 ERCC4Q92889 916 aaPredicted RBP21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 DCBLD2Q96PD2 775 aa21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 PAXBP1Q9Y5B6 917 aa21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 TP53BP1Q12888 1972 aaPredicted RBP21.7■■□□□ 1.06
SQSTM1-210ENST00000506042 THAP12O43422 761 aa21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 LETM1O95202 739 aaPredicted RBP21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 EPHA8P29322 1005 aaPredicted RBP21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 GPD2P43304 727 aa21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 PMS1P54277 932 aaKnown RBP21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 BECN1Q14457 450 aa21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 EFHC1Q5JVL4 640 aa21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 SMYD5Q6GMV2 418 aa21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 GATAD2AQ86YP4 633 aa21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 STK40Q8N2I9 435 aa21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 EID2Q8N6I1 236 aa21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 ADAM32Q8TC27 787 aa21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 SAP25Q8TEE9 199 aa21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 LMLNQ96KR4 655 aa21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 MTG2Q9H4K7 406 aa21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 DYRK4Q9NR20 520 aa21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 INTS6Q9UL03 887 aaKnown RBP21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 SLCO1B1Q9Y6L6 691 aa21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 PLXNA2O75051 1894 aa21.69■■□□□ 1.06
SQSTM1-210ENST00000506042 NUMA1Q14980 2115 aa21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 FAM149AA5PLN7 773 aa21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 RNGTTO60942 597 aaKnown RBP21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 GNA15P30679 374 aa21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 RPL34P49207 117 aaKnown RBP21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 VASPP50552 380 aaPredicted RBP21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 NXPH1P58417 271 aa21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 KRT83P78385 493 aa21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 KCNH2Q12809 1159 aa21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 ZNF177Q13360 481 aaPredicted RBP21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 ZC3H12AQ5D1E8 599 aaKnown RBP21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 FSCBQ5H9T9 825 aa21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 ACBD5Q5T8D3 534 aaPredicted RBP21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 CCAR2Q8N163 923 aaKnown RBP21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 RPL10LQ96L21 214 aaKnown RBP21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 RPRD1AQ96P16 312 aaPredicted RBP21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 UBL7Q96S82 380 aaPredicted RBP21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 NRSN2Q9GZP1 204 aa21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 ANKRD11Q6UB99 2663 aaPredicted RBP21.68■■□□□ 1.06
SQSTM1-210ENST00000506042 ZZEF1O43149 2961 aa21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 PRAMEF26H0Y7S4 382 aa21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 RNF225M0QZC1 329 aaPredicted RBP21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 LATO43561 262 aa21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 HSF2BPO75031 334 aa21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 PDGFRAP16234 1089 aa21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 CKMT2P17540 419 aa21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 RXRGP48443 463 aa21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 PLK1P53350 603 aa21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 E2F1Q01094 437 aa21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 CAMK2BQ13554 666 aa21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 NELFBQ8WX92 580 aa21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 ORAI3Q9BRQ5 295 aa21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 SLC4A5Q9BY07 1137 aa21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 PREBQ9HCU5 417 aa21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 UBE2TQ9NPD8 197 aaPredicted RBP21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 DDIT4Q9NX09 232 aa21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 SERGEFQ9UGK8 458 aa21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 SLCO3A1Q9UIG8 710 aa21.67■■□□□ 1.06
SQSTM1-210ENST00000506042 NYNRINQ9P2P1 1898 aaKnown RBP21.66■■□□□ 1.06
SQSTM1-210ENST00000506042 PLK4O00444 970 aa21.66■■□□□ 1.06
SQSTM1-210ENST00000506042 SOWAHCQ53LP3 525 aaPredicted RBP21.66■■□□□ 1.06
SQSTM1-210ENST00000506042 MMS22LQ6ZRQ5 1243 aa21.66■■□□□ 1.06
SQSTM1-210ENST00000506042 TMEM110Q86TL2 294 aa21.66■■□□□ 1.06
SQSTM1-210ENST00000506042 TRIM69Q86WT6 500 aa21.66■■□□□ 1.06
SQSTM1-210ENST00000506042 AADATQ8N5Z0 425 aa21.66■■□□□ 1.06
SQSTM1-210ENST00000506042 FAM174AQ8TBP5 190 aa21.66■■□□□ 1.06
SQSTM1-210ENST00000506042 PTPRN2Q92932 1015 aa21.66■■□□□ 1.06
SQSTM1-210ENST00000506042 FAM129BQ96TA1 746 aa21.66■■□□□ 1.06
SQSTM1-210ENST00000506042 INTS2Q9H0H0 1204 aaKnown RBP21.66■■□□□ 1.06
SQSTM1-210ENST00000506042 SYNCQ9H7C4 482 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms