RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 C1orf232A0A0U1RR37 186 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 PPP1R3GB7ZBB8 358 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 TK2O00142 265 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 PPEF2O14830 753 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 STX10O60499 249 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 CNOT3O75175 753 aaKnown RBP11.89□□□□□ -0.51
BRCA1-222ENST00000493919 AKAP3O75969 853 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 RECKO95980 971 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 SOD2P04179 222 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 HMGN1P05114 100 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 CYP3A5P20815 502 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 CCNE1P24864 410 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 GSSP48637 474 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 PCYT1AP49585 367 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 ARFIP2P53365 341 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 PPP2R2BQ00005 443 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 SURF1Q15526 300 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 EDRF1Q3B7T1 1238 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 PPP6R3Q5H9R7 873 aaPredicted RBP11.89□□□□□ -0.51
BRCA1-222ENST00000493919 FAM171A1Q5VUB5 890 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 ANKRD40Q6AI12 368 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 DCLRE1AQ6PJP8 1040 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 TRPM8Q7Z2W7 1104 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 RBM23Q86U06 439 aaKnown RBP11.89□□□□□ -0.51
BRCA1-222ENST00000493919 ST13P4Q8IZP2 240 aaPredicted RBP11.89□□□□□ -0.51
BRCA1-222ENST00000493919 ZNF565Q8N9K5 539 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 OR5B17Q8NGF7 314 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 LILRB4Q8NHJ6 448 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 MAFAQ8NHW3 353 aaPredicted RBP11.89□□□□□ -0.51
BRCA1-222ENST00000493919 BTBD6Q96KE9 485 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 POP1Q99575 1024 aaKnown RBP11.89□□□□□ -0.51
BRCA1-222ENST00000493919 SELENOOQ9BVL4 669 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 WNT5BQ9H1J7 359 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 NSUN3Q9H649 340 aaKnown RBP11.89□□□□□ -0.51
BRCA1-222ENST00000493919 DMAC2Q9NW81 257 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.89□□□□□ -0.51
BRCA1-222ENST00000493919 HECAQ9UBI9 543 aaPredicted RBP11.89□□□□□ -0.51
BRCA1-222ENST00000493919 DUSP12Q9UNI6 340 aa11.89□□□□□ -0.51
BRCA1-222ENST00000493919 FAF1Q9UNN5 650 aaPredicted RBP11.89□□□□□ -0.51
BRCA1-222ENST00000493919 HIDE1A8MVS5 230 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 KRIT1O00522 736 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 PFDN6O15212 129 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 KRT75O95678 551 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 PRLP01236 227 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 TNNC2P02585 160 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 CAPNS1P04632 268 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 POLR2BP30876 1174 aaKnown RBP11.88□□□□□ -0.51
BRCA1-222ENST00000493919 GLUD2P49448 558 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 ATP11AP98196 1134 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 PLIN5Q00G26 463 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 CHRNEQ04844 493 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 NFE2Q16621 373 aaPredicted RBP11.88□□□□□ -0.51
BRCA1-222ENST00000493919 TCEAL5Q5H9L2 206 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 C9orf57Q5W0N0 161 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 C1orf228Q6PIY5 440 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 TAS1R1Q7RTX1 841 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 ADGRD2Q7Z7M1 963 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 WDR49Q8IV35 697 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 RAVER1Q8IY67 606 aaKnown RBP11.88□□□□□ -0.51
BRCA1-222ENST00000493919 MGARPQ8TDB4 240 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 NCLNQ969V3 563 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 EME1Q96AY2 570 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 FAM136AQ96C01 138 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 ART5Q96L15 291 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 CDRT15Q96T59 188 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 PNKPQ96T60 521 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 CGRRF1Q99675 332 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 RUBCNLQ9H714 662 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 INTS13Q9NVM9 706 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 DDX18Q9NVP1 670 aaKnown RBP11.88□□□□□ -0.51
BRCA1-222ENST00000493919 ABI2Q9NYB9 513 aaPredicted RBP11.88□□□□□ -0.51
BRCA1-222ENST00000493919 IL37Q9NZH6 218 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 STXBP5LQ9Y2K9 1186 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 VCANP13611 3396 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 TMEM189-UBE2V1I3L0A0 370 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 TRAPPC3O43617 180 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 GPC4O75487 556 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 CHEK2O96017 543 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 CTSAP10619 480 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 LRPAP1P30533 357 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 SLC26A3P40879 764 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 FKBP3Q00688 224 aaKnown RBP11.88□□□□□ -0.51
BRCA1-222ENST00000493919 ELAVL2Q12926 359 aaKnown RBP11.88□□□□□ -0.51
BRCA1-222ENST00000493919 ZNF124Q15973 351 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 NFIL3Q16649 462 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 USP41Q3LFD5 358 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 CFAP221Q4G0U5 840 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 KDELC1Q6UW63 502 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 RNF135Q8IUD6 432 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 ZBED8Q8IZ13 594 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 C1orf127Q8N9H9 656 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 RIN2Q8WYP3 895 aaPredicted RBP11.88□□□□□ -0.51
BRCA1-222ENST00000493919 TTC17Q96AE7 1141 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 HDAC11Q96DB2 347 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 MFSD14AQ96MC6 490 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 EDEM3Q9BZQ6 932 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 IGFLR1Q9H665 355 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 NTN4Q9HB63 628 aa11.88□□□□□ -0.51
BRCA1-222ENST00000493919 NGRNQ9NPE2 291 aaKnown RBP11.88□□□□□ -0.51
BRCA1-222ENST00000493919 MRPL17Q9NRX2 175 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms