RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 FSCBQ5H9T9 825 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 TJAP1Q5JTD0 557 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 RNF219Q5W0B1 726 aaPredicted RBP12.56□□□□□ -0.4
SDC1-206ENST00000482879 CXorf57Q6NSI4 855 aaKnown RBP12.56□□□□□ -0.4
SDC1-206ENST00000482879 BBS12Q6ZW61 710 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 C12orf40Q86WS4 652 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 SLC13A5Q86YT5 568 aaPredicted RBP12.56□□□□□ -0.4
SDC1-206ENST00000482879 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.56□□□□□ -0.4
SDC1-206ENST00000482879 ETFBKMTQ8IXQ9 262 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 GJD3Q8N144 294 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 UMODL1-AS1Q8N2C9 162 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 LZTR1Q8N653 840 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 PLD5Q8N7P1 536 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 NETO2Q8NC67 525 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 KIF18AQ8NI77 898 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 CELF6Q96J87 481 aaKnown RBP12.56□□□□□ -0.4
SDC1-206ENST00000482879 MS4A14Q96JA4 679 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 KLC2Q9H0B6 622 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 NOL6Q9H6R4 1146 aaKnown RBP12.56□□□□□ -0.4
SDC1-206ENST00000482879 C8orf33Q9H7E9 229 aaPredicted RBP12.56□□□□□ -0.4
SDC1-206ENST00000482879 HEBP1Q9NRV9 189 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 DEC1Q9P2X7 70 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 FBXO10Q9UK96 956 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 DUSP12Q9UNI6 340 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 COL4A2P08572 1712 aa12.56□□□□□ -0.4
SDC1-206ENST00000482879 KIAA1549LQ6ZVL6 1849 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 NYNRINQ9P2P1 1898 aaKnown RBP12.55□□□□□ -0.4
SDC1-206ENST00000482879 COL4A3Q01955 1670 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 TCRBV7S2A1N4TA0A589 114 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.55□□□□□ -0.4
SDC1-206ENST00000482879 RASA4BC9J798 803 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 TRIM24O15164 1050 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 RASA4O43374 803 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 MFSD11O43934 449 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 RAMP2O60895 175 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 URI1O94763 535 aaPredicted RBP12.55□□□□□ -0.4
SDC1-206ENST00000482879 FGGP02679 453 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 CISD3P0C7P0 127 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 TGM2P21980 687 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 CD70P32970 193 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 OPRD1P41143 372 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 CSKP41240 450 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 DGKGP49619 791 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 NDST2P52849 883 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 YBEYP58557 167 aaPredicted RBP12.55□□□□□ -0.4
SDC1-206ENST00000482879 GNA12Q03113 381 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 GBE1Q04446 702 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 POLD3Q15054 466 aaPredicted RBP12.55□□□□□ -0.4
SDC1-206ENST00000482879 LONRF2Q1L5Z9 754 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 SLC44A4Q53GD3 710 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 ASTLQ6HA08 431 aaPredicted RBP12.55□□□□□ -0.4
SDC1-206ENST00000482879 GRAMD4Q6IC98 578 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 NPNTQ6UXI9 565 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 ZNF783Q6ZMS7 281 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 ADAT2Q7Z6V5 191 aaKnown RBP12.55□□□□□ -0.4
SDC1-206ENST00000482879 RASGEF1CQ8N431 466 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 NPWQ8N729 165 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 OR7D4Q8NG98 312 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 OR52K2Q8NGK3 314 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 HAUS1Q96CS2 278 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 CAPZA3Q96KX2 299 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 NECAB3Q96P71 396 aaPredicted RBP12.55□□□□□ -0.4
SDC1-206ENST00000482879 SPON2Q9BUD6 331 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 SLC39A8Q9C0K1 460 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 MUC3BQ9H195 1237 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 MAGEH1Q9H213 219 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 CD320Q9NPF0 282 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 ABCB8Q9NUT2 735 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 HEY1Q9Y5J3 304 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 PIAS3Q9Y6X2 628 aa12.55□□□□□ -0.4
SDC1-206ENST00000482879 A0A0D9SEW6 157 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 ARHGAP42A6NI28 874 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 SPECC1L-ADORA2AF8WAN1 911 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 DFFAO00273 331 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 MAP3K6O95382 1288 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 PABPC1P11940 636 aaKnown RBP12.54□□□□□ -0.4
SDC1-206ENST00000482879 GLULP15104 373 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 MZF1P28698 734 aaPredicted RBP12.54□□□□□ -0.4
SDC1-206ENST00000482879 HLA-FP30511 346 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 CTHP32929 405 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 ACVRL1P37023 503 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 ETFBP38117 255 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 EIF2DP41214 584 aaKnown RBP12.54□□□□□ -0.4
SDC1-206ENST00000482879 NR2C2P49116 596 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 NUMBP49757 651 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 GALK1P51570 392 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 KDSRQ06136 332 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 SLC10A2Q12908 348 aaPredicted RBP12.54□□□□□ -0.4
SDC1-206ENST00000482879 SLC12A1Q13621 1099 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 PREPLQ4J6C6 727 aaPredicted RBP12.54□□□□□ -0.4
SDC1-206ENST00000482879 IER5LQ5T953 404 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 AFMIDQ63HM1 303 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 NAIF1Q69YI7 327 aaPredicted RBP12.54□□□□□ -0.4
SDC1-206ENST00000482879 IL31Q6EBC2 164 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 BZW1Q7L1Q6 419 aaKnown RBP12.54□□□□□ -0.4
SDC1-206ENST00000482879 RALGPS2Q86X27 583 aaPredicted RBP12.54□□□□□ -0.4
SDC1-206ENST00000482879 ZNF354CQ86Y25 554 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 ARHGAP12Q8IWW6 846 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 TP53INP2Q8IXH6 220 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 APCDD1Q8J025 514 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms