RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 SCML1Q9UN30 329 aa22.41■■□□□ 1.18
COL9A3-211ENST00000477612 OR51B4Q9Y5P0 310 aa22.41■■□□□ 1.18
COL9A3-211ENST00000477612 ATXN2Q99700 1313 aaKnown RBP22.4■■□□□ 1.18
COL9A3-211ENST00000477612 IGLV3-10A0A075B6K4 115 aa22.4■■□□□ 1.18
COL9A3-211ENST00000477612 METTL12A8MUP2 240 aa22.4■■□□□ 1.18
COL9A3-211ENST00000477612 SIN3BO75182 1162 aa22.4■■□□□ 1.18
COL9A3-211ENST00000477612 PDGFRAP16234 1089 aa22.4■■□□□ 1.18
COL9A3-211ENST00000477612 IRAK1P51617 712 aa22.4■■□□□ 1.18
COL9A3-211ENST00000477612 CLEC16AQ2KHT3 1053 aa22.4■■□□□ 1.18
COL9A3-211ENST00000477612 WDR45BQ5MNZ6 344 aa22.4■■□□□ 1.18
COL9A3-211ENST00000477612 C9orf64Q5T6V5 341 aa22.4■■□□□ 1.18
COL9A3-211ENST00000477612 OR52K2Q8NGK3 314 aa22.4■■□□□ 1.18
COL9A3-211ENST00000477612 SLC30A5Q8TAD4 765 aa22.4■■□□□ 1.18
COL9A3-211ENST00000477612 CFAP57Q96MR6 1250 aa22.4■■□□□ 1.18
COL9A3-211ENST00000477612 SIK2Q9H0K1 926 aa22.4■■□□□ 1.18
COL9A3-211ENST00000477612 MTG2Q9H4K7 406 aa22.4■■□□□ 1.18
COL9A3-211ENST00000477612 TMEM9BQ9NQ34 198 aa22.4■■□□□ 1.18
COL9A3-211ENST00000477612 METTL5Q9NRN9 209 aaKnown RBP22.4■■□□□ 1.18
COL9A3-211ENST00000477612 SLCO3A1Q9UIG8 710 aa22.4■■□□□ 1.18
COL9A3-211ENST00000477612 SPTBN2O15020 2390 aa22.39■■□□□ 1.18
COL9A3-211ENST00000477612 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP22.39■■□□□ 1.17
COL9A3-211ENST00000477612 C4orf47A7E2U8 309 aa22.39■■□□□ 1.17
COL9A3-211ENST00000477612 CCDC172P0C7W6 258 aa22.39■■□□□ 1.17
COL9A3-211ENST00000477612 FERP16591 822 aa22.39■■□□□ 1.17
COL9A3-211ENST00000477612 RDXP35241 583 aaKnown RBP22.39■■□□□ 1.17
COL9A3-211ENST00000477612 GGCXP38435 758 aa22.39■■□□□ 1.17
COL9A3-211ENST00000477612 ZNF177Q13360 481 aaPredicted RBP22.39■■□□□ 1.17
COL9A3-211ENST00000477612 ZNF776Q68DI1 518 aaPredicted RBP22.39■■□□□ 1.17
COL9A3-211ENST00000477612 IRF2BP2Q7Z5L9 587 aa22.39■■□□□ 1.17
COL9A3-211ENST00000477612 PTPRN2Q92932 1015 aa22.39■■□□□ 1.17
COL9A3-211ENST00000477612 AGPAT1Q99943 283 aa22.39■■□□□ 1.17
COL9A3-211ENST00000477612 C11orf70Q9BRQ4 267 aa22.39■■□□□ 1.17
COL9A3-211ENST00000477612 FEM1AQ9BSK4 669 aa22.39■■□□□ 1.17
COL9A3-211ENST00000477612 SUSD2Q9UGT4 822 aa22.39■■□□□ 1.17
COL9A3-211ENST00000477612 A0A1B0GTH6 734 aa22.38■■□□□ 1.17
COL9A3-211ENST00000477612 EDDM13A0A1B0GTR0 161 aa22.38■■□□□ 1.17
COL9A3-211ENST00000477612 A0A1W2PQC6 194 aa22.38■■□□□ 1.17
COL9A3-211ENST00000477612 FAM170AA1A519 330 aa22.38■■□□□ 1.17
COL9A3-211ENST00000477612 C2CD4BA6NLJ0 364 aa22.38■■□□□ 1.17
COL9A3-211ENST00000477612 TTC34A8MYJ7 566 aa22.38■■□□□ 1.17
COL9A3-211ENST00000477612 CNTN5O94779 1100 aa22.38■■□□□ 1.17
COL9A3-211ENST00000477612 DNTTP04053 509 aa22.38■■□□□ 1.17
COL9A3-211ENST00000477612 ENGP17813 658 aa22.38■■□□□ 1.17
COL9A3-211ENST00000477612 NNMTP40261 264 aa22.38■■□□□ 1.17
COL9A3-211ENST00000477612 PTPN9P43378 593 aa22.38■■□□□ 1.17
COL9A3-211ENST00000477612 NSFP46459 744 aaKnown RBP22.38■■□□□ 1.17
COL9A3-211ENST00000477612 DAB2IPQ5VWQ8 1189 aa22.38■■□□□ 1.17
COL9A3-211ENST00000477612 USP30Q70CQ3 517 aa22.38■■□□□ 1.17
COL9A3-211ENST00000477612 EMC1Q8N766 993 aa22.38■■□□□ 1.17
COL9A3-211ENST00000477612 RXFP2Q8WXD0 754 aa22.38■■□□□ 1.17
COL9A3-211ENST00000477612 BAP1Q92560 729 aa22.38■■□□□ 1.17
COL9A3-211ENST00000477612 CENPIQ92674 756 aaPredicted RBP22.38■■□□□ 1.17
COL9A3-211ENST00000477612 RPL10LQ96L21 214 aaKnown RBP22.38■■□□□ 1.17
COL9A3-211ENST00000477612 SYT11Q9BT88 431 aa22.38■■□□□ 1.17
COL9A3-211ENST00000477612 ADAM22Q9P0K1 906 aa22.38■■□□□ 1.17
COL9A3-211ENST00000477612 PCNX2A6NKB5 2137 aa22.37■■□□□ 1.17
COL9A3-211ENST00000477612 TCRBV5S1A1TA0A578 114 aa22.37■■□□□ 1.17
COL9A3-211ENST00000477612 CALB1P05937 261 aa22.37■■□□□ 1.17
COL9A3-211ENST00000477612 ACSL1P33121 698 aa22.37■■□□□ 1.17
COL9A3-211ENST00000477612 CCDC14Q49A88 953 aa22.37■■□□□ 1.17
COL9A3-211ENST00000477612 FILIP1LQ4L180 1135 aa22.37■■□□□ 1.17
COL9A3-211ENST00000477612 ALFQ53S48 1182 aa22.37■■□□□ 1.17
COL9A3-211ENST00000477612 PPM1JQ5JR12 505 aa22.37■■□□□ 1.17
COL9A3-211ENST00000477612 RNF219Q5W0B1 726 aaPredicted RBP22.37■■□□□ 1.17
COL9A3-211ENST00000477612 LRRC31Q6UY01 552 aa22.37■■□□□ 1.17
COL9A3-211ENST00000477612 STRADAQ7RTN6 431 aa22.37■■□□□ 1.17
COL9A3-211ENST00000477612 SETD3Q86TU7 594 aaPredicted RBP22.37■■□□□ 1.17
COL9A3-211ENST00000477612 CACUL1Q86Y37 369 aa22.37■■□□□ 1.17
COL9A3-211ENST00000477612 RGL4Q8IZJ4 473 aa22.37■■□□□ 1.17
COL9A3-211ENST00000477612 C3orf20Q8ND61 904 aa22.37■■□□□ 1.17
COL9A3-211ENST00000477612 JOSD2Q8TAC2 188 aa22.37■■□□□ 1.17
COL9A3-211ENST00000477612 FRS2Q8WU20 508 aa22.37■■□□□ 1.17
COL9A3-211ENST00000477612 FAM129BQ96TA1 746 aa22.37■■□□□ 1.17
COL9A3-211ENST00000477612 SGK2Q9HBY8 427 aa22.37■■□□□ 1.17
COL9A3-211ENST00000477612 TMPRSS4Q9NRS4 437 aa22.37■■□□□ 1.17
COL9A3-211ENST00000477612 E9PAM4 449 aa22.36■■□□□ 1.17
COL9A3-211ENST00000477612 ATP9BO43861 1147 aa22.36■■□□□ 1.17
COL9A3-211ENST00000477612 RNASEH1O60930 286 aaKnown RBP22.36■■□□□ 1.17
COL9A3-211ENST00000477612 KRT3P12035 628 aa22.36■■□□□ 1.17
COL9A3-211ENST00000477612 GNSP15586 552 aa22.36■■□□□ 1.17
COL9A3-211ENST00000477612 SDC4P31431 198 aa22.36■■□□□ 1.17
COL9A3-211ENST00000477612 STK19P49842 368 aaPredicted RBP22.36■■□□□ 1.17
COL9A3-211ENST00000477612 NRG1Q02297 640 aaPredicted RBP22.36■■□□□ 1.17
COL9A3-211ENST00000477612 C1QBPQ07021 282 aaKnown RBP22.36■■□□□ 1.17
COL9A3-211ENST00000477612 TTC31Q49AM3 519 aaPredicted RBP22.36■■□□□ 1.17
COL9A3-211ENST00000477612 DCAF12L1Q5VU92 463 aa22.36■■□□□ 1.17
COL9A3-211ENST00000477612 MON1BQ7L1V2 547 aa22.36■■□□□ 1.17
COL9A3-211ENST00000477612 FAM131BQ86XD5 332 aa22.36■■□□□ 1.17
COL9A3-211ENST00000477612 C1orf216Q8TAB5 229 aa22.36■■□□□ 1.17
COL9A3-211ENST00000477612 NAP1L5Q96NT1 182 aaPredicted RBP22.36■■□□□ 1.17
COL9A3-211ENST00000477612 BTBD1Q9H0C5 482 aa22.36■■□□□ 1.17
COL9A3-211ENST00000477612 PABPC3Q9H361 631 aaKnown RBP22.36■■□□□ 1.17
COL9A3-211ENST00000477612 ZNF212Q9UDV6 495 aa22.36■■□□□ 1.17
COL9A3-211ENST00000477612 SNX10Q9Y5X0 201 aa22.36■■□□□ 1.17
COL9A3-211ENST00000477612 SIGLEC16A6NMB1 481 aa22.35■■□□□ 1.17
COL9A3-211ENST00000477612 C10orf142B7Z368 130 aa22.35■■□□□ 1.17
COL9A3-211ENST00000477612 CFIP05156 583 aa22.35■■□□□ 1.17
COL9A3-211ENST00000477612 MAOBP27338 520 aa22.35■■□□□ 1.17
COL9A3-211ENST00000477612 ATP11AP98196 1134 aa22.35■■□□□ 1.17
COL9A3-211ENST00000477612 GFPT1Q06210 699 aaPredicted RBP22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms