RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 DAB2P98082 770 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 INSM1Q01101 510 aaPredicted RBP13.03□□□□□ -0.32
SKA3-206ENST00000475251 SULT2A1Q06520 285 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 ZNF211Q13398 564 aaPredicted RBP13.03□□□□□ -0.32
SKA3-206ENST00000475251 SLC12A1Q13621 1099 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 STILQ15468 1287 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 PROX2Q3B8N5 592 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 MS4A13Q5J8X5 152 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 FOXD4L5Q5VV16 416 aaPredicted RBP13.03□□□□□ -0.32
SKA3-206ENST00000475251 FAM46CQ5VWP2 391 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 ERICH1Q86X53 443 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 UBA3Q8TBC4 463 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 FOXD4L4Q8WXT5 416 aaPredicted RBP13.03□□□□□ -0.32
SKA3-206ENST00000475251 PRICKLE1Q96MT3 831 aaPredicted RBP13.03□□□□□ -0.32
SKA3-206ENST00000475251 SPAG5Q96R06 1193 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 TRIM62Q9BVG3 475 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 EVA1BQ9NVM1 165 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 RCOR1Q9UKL0 485 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 INTS6Q9UL03 887 aaKnown RBP13.03□□□□□ -0.32
SKA3-206ENST00000475251 MAPK8IP1Q9UQF2 711 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 TLR6Q9Y2C9 796 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 MYLKQ15746 1914 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 WNT9AO14904 365 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 SART1O43290 800 aaKnown RBP13.02□□□□□ -0.33
SKA3-206ENST00000475251 RNGTTO60942 597 aaKnown RBP13.02□□□□□ -0.33
SKA3-206ENST00000475251 MT-CO3P00414 261 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 APOEP02649 317 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 PAEPP09466 180 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 PPP2CBP62714 309 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 RPS24P62847 133 aaKnown RBP13.02□□□□□ -0.33
SKA3-206ENST00000475251 PPP2CAP67775 309 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 NUCB2P80303 420 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 KCNH2Q12809 1159 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 SETMARQ53H47 684 aaPredicted RBP13.02□□□□□ -0.33
SKA3-206ENST00000475251 TCERG1LQ5VWI1 586 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 NADSYN1Q6IA69 706 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 LCLAT1Q6UWP7 414 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.02□□□□□ -0.33
SKA3-206ENST00000475251 KDM7AQ6ZMT4 941 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 KANSL1Q7Z3B3 1105 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 TRIM69Q86WT6 500 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 STK40Q8N2I9 435 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 SLC35F5Q8WV83 523 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 PTPRN2Q92932 1015 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 CCDC34Q96HJ3 373 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 HSFY1Q96LI6 401 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 PPP1R9BQ96SB3 815 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 FAM129BQ96TA1 746 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 TJP2Q9UDY2 1190 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 CYTH4Q9UIA0 394 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 COQ4Q9Y3A0 265 aa13.02□□□□□ -0.33
SKA3-206ENST00000475251 KALRNO60229 2985 aa13.01□□□□□ -0.33
SKA3-206ENST00000475251 A0A1B0GVL5 298 aa13.01□□□□□ -0.33
SKA3-206ENST00000475251 C1QTNF3-AMACRE9PGA6 284 aa13.01□□□□□ -0.33
SKA3-206ENST00000475251 PRAMEF26H0Y7S4 382 aa13.01□□□□□ -0.33
SKA3-206ENST00000475251 PLRG1O43660 514 aaKnown RBP13.01□□□□□ -0.33
SKA3-206ENST00000475251 ALPPL2P10696 532 aa13.01□□□□□ -0.33
SKA3-206ENST00000475251 CTSOP43234 321 aaPredicted RBP13.01□□□□□ -0.33
SKA3-206ENST00000475251 SYKP43405 635 aa13.01□□□□□ -0.33
SKA3-206ENST00000475251 OXCT1P55809 520 aa13.01□□□□□ -0.33
SKA3-206ENST00000475251 PKDCCQ504Y2 493 aa13.01□□□□□ -0.33
SKA3-206ENST00000475251 ZCWPW2Q504Y3 356 aa13.01□□□□□ -0.33
SKA3-206ENST00000475251 DCAF17Q5H9S7 520 aaPredicted RBP13.01□□□□□ -0.33
SKA3-206ENST00000475251 FSCBQ5H9T9 825 aa13.01□□□□□ -0.33
SKA3-206ENST00000475251 SPATS2Q86XZ4 545 aaKnown RBP13.01□□□□□ -0.33
SKA3-206ENST00000475251 OR8D1Q8WZ84 308 aa13.01□□□□□ -0.33
SKA3-206ENST00000475251 FAM131CQ96AQ9 280 aa13.01□□□□□ -0.33
SKA3-206ENST00000475251 EEF2KMTQ96G04 330 aa13.01□□□□□ -0.33
SKA3-206ENST00000475251 FCRL2Q96LA5 508 aaPredicted RBP13.01□□□□□ -0.33
SKA3-206ENST00000475251 DEPDC7Q96QD5 511 aa13.01□□□□□ -0.33
SKA3-206ENST00000475251 NUCKS1Q9H1E3 243 aaKnown RBP13.01□□□□□ -0.33
SKA3-206ENST00000475251 ARHGAP20Q9P2F6 1191 aa13.01□□□□□ -0.33
SKA3-206ENST00000475251 SLCO3A1Q9UIG8 710 aa13.01□□□□□ -0.33
SKA3-206ENST00000475251 HPSEQ9Y251 543 aa13.01□□□□□ -0.33
SKA3-206ENST00000475251 NYNRINQ9P2P1 1898 aaKnown RBP13.01□□□□□ -0.33
SKA3-206ENST00000475251 FLNBO75369 2602 aaKnown RBP13.01□□□□□ -0.33
SKA3-206ENST00000475251 M0QYV0 167 aa13□□□□□ -0.33
SKA3-206ENST00000475251 SLC16A3O15427 465 aaKnown RBP13□□□□□ -0.33
SKA3-206ENST00000475251 SIGLEC6O43699 453 aa13□□□□□ -0.33
SKA3-206ENST00000475251 HSP90AA1P07900 732 aaKnown RBP13□□□□□ -0.33
SKA3-206ENST00000475251 DRD3P35462 400 aa13□□□□□ -0.33
SKA3-206ENST00000475251 RGS7P49802 495 aa13□□□□□ -0.33
SKA3-206ENST00000475251 ERVPABLB-1P60509 514 aa13□□□□□ -0.33
SKA3-206ENST00000475251 CCDC15Q0P6D6 951 aa13□□□□□ -0.33
SKA3-206ENST00000475251 DPYDQ12882 1025 aa13□□□□□ -0.33
SKA3-206ENST00000475251 DCAF6Q58WW2 860 aa13□□□□□ -0.33
SKA3-206ENST00000475251 TTC39BQ5VTQ0 682 aaPredicted RBP13□□□□□ -0.33
SKA3-206ENST00000475251 PMF1Q6P1K2 205 aa13□□□□□ -0.33
SKA3-206ENST00000475251 TMEM270Q6UE05 265 aa13□□□□□ -0.33
SKA3-206ENST00000475251 MMS22LQ6ZRQ5 1243 aa13□□□□□ -0.33
SKA3-206ENST00000475251 CFAP52Q8N1V2 620 aa13□□□□□ -0.33
SKA3-206ENST00000475251 OR4C6Q8NH72 309 aa13□□□□□ -0.33
SKA3-206ENST00000475251 DQX1Q8TE96 717 aaKnown RBP13□□□□□ -0.33
SKA3-206ENST00000475251 KCNE4Q8WWG9 221 aa13□□□□□ -0.33
SKA3-206ENST00000475251 KLHDC7BQ96G42 594 aa13□□□□□ -0.33
SKA3-206ENST00000475251 RPL10LQ96L21 214 aaKnown RBP13□□□□□ -0.33
SKA3-206ENST00000475251 USP29Q9HBJ7 922 aa13□□□□□ -0.33
SKA3-206ENST00000475251 PREBQ9HCU5 417 aa13□□□□□ -0.33
SKA3-206ENST00000475251 PTPRQQ9UMZ3 2332 aa13□□□□□ -0.33
SKA3-206ENST00000475251 F5H5T6 163 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms