RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 PDZD8Q8NEN9 1154 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 WFDC5Q8TCV5 224 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 PLEKHO2Q8TD55 490 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 CACTINQ8WUQ7 758 aaKnown RBP5.53□□□□□ -1.52
PTPN4-209ENST00000469511 OVCA2Q8WZ82 227 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 EXTL1Q92935 676 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 HPS3Q969F9 1004 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 CDK5RAP3Q96JB5 506 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 CEP295NLQ96MC4 621 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 ZNF578Q96N58 590 aaPredicted RBP5.53□□□□□ -1.52
PTPN4-209ENST00000469511 NSUN5Q96P11 429 aaKnown RBP5.53□□□□□ -1.52
PTPN4-209ENST00000469511 MED10Q9BTT4 135 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 ACE2Q9BYF1 805 aaPredicted RBP5.53□□□□□ -1.52
PTPN4-209ENST00000469511 RAB34Q9BZG1 259 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 ELOVL4Q9GZR5 314 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 NACA2Q9H009 215 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 BTBD1Q9H0C5 482 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 NEUROG2Q9H2A3 272 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 TMEM245Q9H330 911 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 SNX25Q9H3E2 840 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 ST6GALNAC4Q9H4F1 302 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 SMYD3Q9H7B4 428 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 KCNK4Q9NYG8 393 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 AGO1Q9UL18 857 aaKnown RBP5.53□□□□□ -1.52
PTPN4-209ENST00000469511 NOL7Q9UMY1 257 aaKnown RBP5.53□□□□□ -1.52
PTPN4-209ENST00000469511 UNC13CQ8NB66 2214 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 SDK2Q58EX2 2172 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 MED13Q9UHV7 2174 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 ITPR2Q14571 2701 aa5.53□□□□□ -1.52
PTPN4-209ENST00000469511 BOD1L1Q8NFC6 3051 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 LRRK1Q38SD2 2015 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 LY6G6EA0A0G2JKS1 128 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 A0A1B0GVM2 712 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 A8MXQ7 604 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 LAD1O00515 517 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 CSO75390 466 aaKnown RBP5.52□□□□□ -1.53
PTPN4-209ENST00000469511 TACC1O75410 805 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 FAM87AP0C7U9 286 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 GP1BBP13224 206 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 WT1P19544 449 aaPredicted RBP5.52□□□□□ -1.53
PTPN4-209ENST00000469511 ACP1P24666 158 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 CD38P28907 300 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 HLA-FP30511 346 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 HOXD13P35453 343 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 ATP5C1P36542 298 aaKnown RBP5.52□□□□□ -1.53
PTPN4-209ENST00000469511 LSSP48449 732 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 CASP4P49662 377 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 NUMBP49757 651 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 TUBP50607 506 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 NEK4P51957 841 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 BCAT1P54687 386 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 MAP3K7CLP57077 242 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 PPP2CBP62714 309 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 PPP2CAP67775 309 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 SRSF11Q05519 484 aaKnown RBP5.52□□□□□ -1.53
PTPN4-209ENST00000469511 GNL2Q13823 731 aaKnown RBP5.52□□□□□ -1.53
PTPN4-209ENST00000469511 POSTNQ15063 836 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 TGIF1Q15583 401 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 C3orf38Q5JPI3 329 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 L1TD1Q5T7N2 865 aaKnown RBP5.52□□□□□ -1.53
PTPN4-209ENST00000469511 BROXQ5VW32 411 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 NXPE4Q6UWF7 544 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 CENPQQ7L2Z9 268 aaPredicted RBP5.52□□□□□ -1.53
PTPN4-209ENST00000469511 ANKS1BQ7Z6G8 1248 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 ACOT1Q86TX2 421 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 ADIPOR2Q86V24 386 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 CCNJLQ8IV13 435 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 DENND1CQ8IV53 801 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 CACTIN-AS1Q8N1I8 211 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 GPD1LQ8N335 351 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 C12orf29Q8N999 325 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 ENGASEQ8NFI3 743 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 NDRG1Q92597 394 aaKnown RBP5.52□□□□□ -1.53
PTPN4-209ENST00000469511 DNAJC19Q96DA6 116 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 ANKRD36BP1Q96IX9 119 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 TCF12Q99081 682 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 XYLT2Q9H1B5 865 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 PCED1AQ9H1Q7 454 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 POLR1BQ9H9Y6 1135 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 AASDHPPTQ9NRN7 309 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 KRT82Q9NSB4 513 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 STARD5Q9NSY2 213 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 FAM49BQ9NUQ9 324 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.52□□□□□ -1.53
PTPN4-209ENST00000469511 PPP4R2Q9NY27 417 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 EHD2Q9NZN4 543 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 ADAMTS1Q9UHI8 967 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 GDF2Q9UK05 429 aaPredicted RBP5.52□□□□□ -1.53
PTPN4-209ENST00000469511 LSM7Q9UK45 103 aaKnown RBP5.52□□□□□ -1.53
PTPN4-209ENST00000469511 SATB2Q9UPW6 733 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 U3KQA8 63 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 TRPM6Q9BX84 2022 aa5.52□□□□□ -1.53
PTPN4-209ENST00000469511 ELOA3CA0A087WX78 387 aaPredicted RBP5.51□□□□□ -1.53
PTPN4-209ENST00000469511 ELOA3DA6NLF2 546 aaPredicted RBP5.51□□□□□ -1.53
PTPN4-209ENST00000469511 TLR4O00206 839 aa5.51□□□□□ -1.53
PTPN4-209ENST00000469511 MID1O15344 667 aa5.51□□□□□ -1.53
PTPN4-209ENST00000469511 FFAR2O15552 330 aa5.51□□□□□ -1.53
PTPN4-209ENST00000469511 EPB41L2O43491 1005 aaKnown RBP5.51□□□□□ -1.53
PTPN4-209ENST00000469511 OPA1O60313 960 aa5.51□□□□□ -1.53
PTPN4-209ENST00000469511 DFNA5O60443 496 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms