RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	SATB1	Q01826	763 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	DPYSL2	Q16555	572 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	GEN1	Q17RS7	908 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	RWDD4	Q6NW29	188 aa	Known RBP	10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	RASSF3	Q86WH2	238 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	PRSS33	Q8NF86	280 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	IGSF8	Q969P0	613 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	SNRNP25	Q9BV90	132 aa	Known RBP	10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	DHX35	Q9H5Z1	703 aa	Known RBP	10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	XPO7	Q9UIA9	1087 aa	Known RBP	10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	ARHGAP42	A6NI28	874 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	ARHGAP6	O43182	974 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	RAMP2	O60895	175 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	LRCH4	O75427	683 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	TFE3	P19532	575 aa	Predicted RBP	10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	NBL1	P41271	181 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	VAV2	P52735	878 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	SEMA3B	Q13214	749 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	C2orf27A	Q580R0	203 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	SPDYC	Q5MJ68	293 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	EGFLAM	Q63HQ2	1017 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	C11orf63	Q6NUN7	778 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	ALLC	Q8N6M5	410 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	CCDC185	Q8N715	623 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	OR2T3	Q8NH03	318 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	LOXL4	Q96JB6	756 aa		10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	FBRSL1	Q9HCM7	1045 aa	Known RBP	10.99	□□□□□ -0.65
UBR4-208	ENST00000459947	LRIG2	O94898	1065 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	GJB6	O95452	261 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	TDGF1	P13385	188 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	OGDH	Q02218	1023 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	GNA12	Q03113	381 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	KRT81	Q14533	505 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	TTC31	Q49AM3	519 aa	Predicted RBP	10.98	□□□□□ -0.65
UBR4-208	ENST00000459947		Q6ZS52	159 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	ADIPOR2	Q86V24	386 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	SYCE1	Q8N0S2	351 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	ZBTB44	Q8NCP5	570 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	EZH1	Q92800	747 aa	Predicted RBP	10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	BHMT	Q93088	406 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	BCCIP	Q9P287	314 aa	Known RBP eCLIP	10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	RAD54B	Q9Y620	910 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	PROB1	E7EW31	1015 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	PJA2	O43164	708 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	LILRB5	O75023	590 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	SRGAP2	O75044	1071 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	EPHB2	P29323	1055 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	ZNF234	Q14588	700 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	FUT11	Q495W5	492 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	C14orf80	Q86SX3	495 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	ZSCAN30	Q86W11	494 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	PLPP6	Q8IY26	295 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	CFAP52	Q8N1V2	620 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	ARHGEF26	Q96DR7	871 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	SPTLC3	Q9NUV7	552 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	PRRT4	C9JH25	899 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947		K7ESF4	209 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	RHOBTB1	O94844	696 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	CHRM1	P11229	460 aa	Predicted RBP	10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	ZFX	P17010	805 aa	Predicted RBP	10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	CD70	P32970	193 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	SSR1	P43307	286 aa	Known RBP	10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	RECQL	P46063	649 aa	Predicted RBP	10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	SGSH	P51688	502 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	CAMK2G	Q13555	558 aa	Predicted RBP	10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	FAM46C	Q5VWP2	391 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	CXorf57	Q6NSI4	855 aa	Known RBP	10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	UMODL1-AS1	Q8N2C9	162 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	SLC35G2	Q8TBE7	412 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	FEM1A	Q9BSK4	669 aa		10.98	□□□□□ -0.65
UBR4-208	ENST00000459947	PSTPIP1	O43586	416 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	KIF5A	Q12840	1032 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	HNRNPA1L2	Q32P51	320 aa	Known RBP	10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	ZNF776	Q68DI1	518 aa	Predicted RBP	10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	RHOT1	Q8IXI2	618 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	BBS5	Q8N3I7	341 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	FAM71B	Q8TC56	605 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	GAB3	Q8WWW8	586 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	ZNF670	Q9BS34	389 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	CALCOCO1	Q9P1Z2	691 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	ATP9B	O43861	1147 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	NOP2	P46087	812 aa	Known RBP	10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	ZNF252P-AS1	Q0IIN9	211 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	GAS6	Q14393	721 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	RABEPK	Q7Z6M1	372 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	NLRP14	Q86W24	1093 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	CCDC33	Q8N5R6	958 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	GPR161	Q8N6U8	529 aa	Known RBP	10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	PCDH20	Q8N6Y1	951 aa	Known RBP	10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	ISG20	Q96AZ6	181 aa	Known RBP	10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	ZNF830	Q96NB3	372 aa	Predicted RBP	10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	ADAM33	Q9BZ11	813 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	ATP13A1	Q9HD20	1204 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	HS3ST2	Q9Y278	367 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	HSPA9	P38646	679 aa	Known RBP	10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	ATXN1	P54253	815 aa	Known RBP	10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	GRM3	Q14832	879 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	RFX8	Q6ZV50	586 aa		10.97	□□□□□ -0.65
UBR4-208	ENST00000459947	NSMCE1	Q8WV22	266 aa		10.97	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms