RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 FTH1P19P0C7X4 201 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 TACR2P21452 398 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 NOS2P35228 1153 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 ARRB1P49407 418 aaPredicted RBP7.3□□□□□ -1.24
VPS41-208ENST00000448833 CCT8P50990 548 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 GALCP54803 685 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 KRT83P78385 493 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 OVGP1Q12889 678 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 ZNF177Q13360 481 aaPredicted RBP7.3□□□□□ -1.24
VPS41-208ENST00000448833 PDCLQ13371 301 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 ARHGAP44Q17R89 818 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 ZC3H12AQ5D1E8 599 aaKnown RBP7.3□□□□□ -1.24
VPS41-208ENST00000448833 C9orf64Q5T6V5 341 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 SYPL2Q5VXT5 272 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 NADSYN1Q6IA69 706 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 DENND1BQ6P3S1 775 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 LRRC31Q6UY01 552 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 PRPF39Q86UA1 669 aaKnown RBP7.3□□□□□ -1.24
VPS41-208ENST00000448833 TAC4Q86UU9 113 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 CHSY1Q86X52 802 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 CACUL1Q86Y37 369 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 CFAP52Q8N1V2 620 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 CHCHD4Q8N4Q1 142 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 OXR1Q8N573 874 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 ZNF366Q8N895 744 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 ZCCHC14Q8WYQ9 949 aaKnown RBP7.3□□□□□ -1.24
VPS41-208ENST00000448833 SHC3Q92529 594 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 KAT5Q92993 513 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 LMLNQ96KR4 655 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 SPAG5Q96R06 1193 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 NUCKS1Q9H1E3 243 aaKnown RBP7.3□□□□□ -1.24
VPS41-208ENST00000448833 PDCL3Q9H2J4 239 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 CD93Q9NPY3 652 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 DDIT4Q9NX09 232 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 STAP1Q9ULZ2 295 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 DMTF1Q9Y222 760 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 KNL1Q8NG31 2342 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 PLXNB3Q9ULL4 1909 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 WDFY3Q8IZQ1 3526 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 TBC1D3DA0A087WVF3 549 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 TBC1D3IA0A087WXS9 549 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 TBC1D3EA0A087X179 549 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 TBC1D3KA0A087X1G2 549 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 TBC1D3FA6NER0 549 aaPredicted RBP7.29□□□□□ -1.24
VPS41-208ENST00000448833 FAM47DPA6NHR8 397 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 SRRM3A6NNA2 597 aaPredicted RBP7.29□□□□□ -1.24
VPS41-208ENST00000448833 TBC1D3LB9A6J9 549 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 E9PAM4 449 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 C1QTNF3-AMACRE9PGA6 284 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 RNGTTO60942 597 aaKnown RBP7.29□□□□□ -1.24
VPS41-208ENST00000448833 IL1BP01584 269 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 TPM2P07951 284 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 TBC1D3HP0C7X1 549 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 ZNF18P17022 549 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 SLC9A1P19634 815 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 SPINK2P20155 84 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 PON1P27169 355 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 ERCC5P28715 1186 aaPredicted RBP7.29□□□□□ -1.24
VPS41-208ENST00000448833 CD38P28907 300 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 SCNN1AP37088 669 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 SGSHP51688 502 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 SLC6A3Q01959 620 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 EIF4EBP2Q13542 120 aaPredicted RBP7.29□□□□□ -1.24
VPS41-208ENST00000448833 MAN2A1Q16706 1144 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 KIF19Q2TAC6 998 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 ACCSLQ4AC99 568 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 FSCBQ5H9T9 825 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 BRMS1LQ5PSV4 323 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 RAP1GAP2Q684P5 730 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 TBC1D3GQ6DHY5 549 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 TBC1D3CQ6IPX1 549 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 CCNI2Q6ZMN8 369 aaPredicted RBP7.29□□□□□ -1.24
VPS41-208ENST00000448833 IQCHQ86VS3 1027 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 MMAAQ8IVH4 418 aaKnown RBP7.29□□□□□ -1.24
VPS41-208ENST00000448833 DHX40Q8IX18 779 aaKnown RBP7.29□□□□□ -1.24
VPS41-208ENST00000448833 TBC1D3Q8IZP1 549 aaPredicted RBP7.29□□□□□ -1.24
VPS41-208ENST00000448833 DEFB106AQ8N104 65 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 CCAR2Q8N163 923 aaKnown RBP7.29□□□□□ -1.24
VPS41-208ENST00000448833 TMEM35BQ8NCS4 154 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 ZNF397Q8NF99 534 aaPredicted RBP7.29□□□□□ -1.24
VPS41-208ENST00000448833 OR2I1PQ8NGU4 316 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 FAM174AQ8TBP5 190 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 ADAM32Q8TC27 787 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 WFDC5Q8TCV5 224 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 OR8D1Q8WZ84 308 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 MYO19Q96H55 970 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 MRGPRX3Q96LB0 322 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 C1orf74Q96LT6 269 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 PRICKLE1Q96MT3 831 aaPredicted RBP7.29□□□□□ -1.24
VPS41-208ENST00000448833 CAMK1GQ96NX5 476 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 RPRD1AQ96P16 312 aaPredicted RBP7.29□□□□□ -1.24
VPS41-208ENST00000448833 SLC2A13Q96QE2 648 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 FEM1AQ9BSK4 669 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 CRACR2AQ9BSW2 395 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 C2orf49Q9BVC5 232 aaPredicted RBP7.29□□□□□ -1.24
VPS41-208ENST00000448833 NEUROG2Q9H2A3 272 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 CCDC86Q9H6F5 360 aaKnown RBP7.29□□□□□ -1.24
VPS41-208ENST00000448833 RETREG1Q9H6L5 497 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 WDCPQ9H6R7 721 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 ERVMER34-1Q9H9K5 563 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms