RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 PHF12Q96QT6 1004 aa9.09□□□□□ -0.95
NIPBL-202ENST00000448238 ERP44Q9BS26 406 aa9.09□□□□□ -0.95
NIPBL-202ENST00000448238 UTYO14607 1347 aa9.09□□□□□ -0.95
NIPBL-202ENST00000448238 CASKO14936 926 aa9.09□□□□□ -0.95
NIPBL-202ENST00000448238 TAF6P49848 677 aa9.09□□□□□ -0.95
NIPBL-202ENST00000448238 PERM1Q5SV97 790 aa9.09□□□□□ -0.95
NIPBL-202ENST00000448238 GSPT2Q8IYD1 628 aaKnown RBP9.09□□□□□ -0.95
NIPBL-202ENST00000448238 KIF12Q96FN5 646 aa9.09□□□□□ -0.95
NIPBL-202ENST00000448238 A1CFQ9NQ94 594 aaKnown RBP9.09□□□□□ -0.95
NIPBL-202ENST00000448238 DNAJC28Q9NX36 388 aa9.09□□□□□ -0.95
NIPBL-202ENST00000448238 HOXC10Q9NYD6 342 aa9.09□□□□□ -0.95
NIPBL-202ENST00000448238 SRRM3A6NNA2 597 aaPredicted RBP9.09□□□□□ -0.96
NIPBL-202ENST00000448238 BCAS1O75363 584 aaPredicted RBP9.09□□□□□ -0.96
NIPBL-202ENST00000448238 SLC7A2P52569 658 aa9.09□□□□□ -0.96
NIPBL-202ENST00000448238 CCZ1BP86790 482 aa9.09□□□□□ -0.96
NIPBL-202ENST00000448238 CCZ1P86791 482 aaPredicted RBP9.09□□□□□ -0.96
NIPBL-202ENST00000448238 DCAF6Q58WW2 860 aa9.09□□□□□ -0.96
NIPBL-202ENST00000448238 PDPK2PQ6A1A2 396 aa9.09□□□□□ -0.96
NIPBL-202ENST00000448238 TMCO6Q96DC7 493 aa9.09□□□□□ -0.96
NIPBL-202ENST00000448238 GIMAP5Q96F15 307 aa9.09□□□□□ -0.96
NIPBL-202ENST00000448238 FAM217BQ9NTX9 383 aaPredicted RBP9.09□□□□□ -0.96
NIPBL-202ENST00000448238 FOXN3O00409 490 aaPredicted RBP9.08□□□□□ -0.96
NIPBL-202ENST00000448238 SLC16A8O95907 504 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 ERP29P30040 261 aaKnown RBP9.08□□□□□ -0.96
NIPBL-202ENST00000448238 NAGLUP54802 743 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 E2F2Q14209 437 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 LCN1P1Q5VSP4 162 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 OR2L8Q8NGY9 312 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 RIT1Q92963 219 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 PTCD3Q96EY7 689 aaKnown RBP9.08□□□□□ -0.96
NIPBL-202ENST00000448238 PLEKHA1Q9HB21 404 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 TM9SF3Q9HD45 589 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 PNO1Q9NRX1 252 aaKnown RBP9.08□□□□□ -0.96
NIPBL-202ENST00000448238 TOR4AQ9NXH8 423 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 PCDH10Q9P2E7 1040 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 FAM86C2PA6NEL3 165 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 TRIM64CA6NLI5 447 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 MID1O15344 667 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 NTRK1P04629 796 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 ADORA2BP29275 332 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 RPL4P36578 427 aaKnown RBP9.08□□□□□ -0.96
NIPBL-202ENST00000448238 GPD2P43304 727 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 TPTEP56180 551 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 ZNF677Q86XU0 584 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 SYT4Q9H2B2 425 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 ARL15Q9NXU5 204 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 SCN8AQ9UQD0 1980 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 ATXN2Q99700 1313 aaKnown RBP9.08□□□□□ -0.96
NIPBL-202ENST00000448238 PEPDP12955 493 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 NTSP30990 170 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 UGT2B15P54855 530 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 FNDC5Q8NAU1 212 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 OSBPL5Q9H0X9 879 aaPredicted RBP9.08□□□□□ -0.96
NIPBL-202ENST00000448238 KCNH1O95259 989 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 RASGRP1O95267 797 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 ITGALP20701 1170 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 CNSTQ6PJW8 725 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 CBWD2Q8IUF1 395 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 ZZZ3Q8IYH5 903 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 CMTR1Q8N1G2 835 aaKnown RBP9.08□□□□□ -0.96
NIPBL-202ENST00000448238 FAM13CQ8NE31 585 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 MCFD2Q8NI22 146 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 MYCBPAPQ8TBZ2 947 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 SEC16AO15027 2179 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 NUDT7P0C024 238 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 PET100P0DJ07 73 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 PDGFRAP16234 1089 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 ADAM17P78536 824 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 ABCA11PQ4W5N1 156 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 RIPOR1Q6ZS17 1223 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 FRMD7Q6ZUT3 714 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 DHX40Q8IX18 779 aaKnown RBP9.08□□□□□ -0.96
NIPBL-202ENST00000448238 ZNF540Q8NDQ6 660 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 AHCYL2Q96HN2 611 aaKnown RBP9.08□□□□□ -0.96
NIPBL-202ENST00000448238 NFKBIZQ9BYH8 718 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 LMAN2LQ9H0V9 348 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 NOL11Q9H8H0 719 aaKnown RBP9.08□□□□□ -0.96
NIPBL-202ENST00000448238 YEATS2Q9ULM3 1422 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 PVALEFA0A1B0GWK0 134 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 GRAP2O75791 330 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 CLPXO76031 633 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 LRIG2O94898 1065 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 MUTP22033 750 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 SLC11A2P49281 568 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 GNA12Q03113 381 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 TDGQ13569 410 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 CHST15Q7LFX5 561 aaPredicted RBP9.08□□□□□ -0.96
NIPBL-202ENST00000448238 C8orf58Q8NAV2 365 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 ATP6V1C2Q8NEY4 427 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 GORASP1Q9BQQ3 440 aa9.08□□□□□ -0.96
NIPBL-202ENST00000448238 RC3H2Q9HBD1 1191 aaKnown RBP9.08□□□□□ -0.96
NIPBL-202ENST00000448238 ZCCHC17Q9NP64 241 aaKnown RBP9.08□□□□□ -0.96
NIPBL-202ENST00000448238 MYH3P11055 1940 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 MYH8P13535 1937 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 ZNF37AP17032 561 aaPredicted RBP9.07□□□□□ -0.96
NIPBL-202ENST00000448238 GDI2P50395 445 aaKnown RBP9.07□□□□□ -0.96
NIPBL-202ENST00000448238 GEMP55040 296 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 RBP5P82980 135 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 SPIDRQ14159 915 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 SLC18A3Q16572 532 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms