RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 IQSEC1Q6DN90 963 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 LUZP2Q86TE4 346 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 DUSP12Q9UNI6 340 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 PEX1O43933 1283 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 CNOT3O75175 753 aaKnown RBP17.48■□□□□ 0.39
PTPRF-209ENST00000438120 CBX6O95503 412 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 IGFBP4P22692 258 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 GRK4P32298 578 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 CD86P42081 329 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 CCL23P55773 120 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 GRIK3Q13003 919 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 FAM98BQ52LJ0 330 aaKnown RBP17.48■□□□□ 0.39
PTPRF-209ENST00000438120 FGD3Q5JSP0 725 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 GJC2Q5T442 439 aaPredicted RBP17.48■□□□□ 0.39
PTPRF-209ENST00000438120 MOB2Q70IA6 237 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 SEMA6AQ9H2E6 1030 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 APOC4-APOC2K7ER74 178 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 MRASO14807 208 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 ATP9AO75110 1047 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 APOC2P02655 101 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 CLTBP09497 229 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 TUFMP49411 452 aaKnown RBP17.48■□□□□ 0.39
PTPRF-209ENST00000438120 FBXL19Q6PCT2 694 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 ZNF621Q6ZSS3 439 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 SNX32Q86XE0 403 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 DHFR2Q86XF0 187 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 OR8H2Q8N162 312 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 LZTR1Q8N653 840 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 NETO2Q8NC67 525 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 ABCC13Q9NSE7 274 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 ARL15Q9NXU5 204 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 BANF1O75531 89 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 ATG7O95352 703 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 FASP25445 335 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 TMED10P49755 219 aaKnown RBP17.47■□□□□ 0.39
PTPRF-209ENST00000438120 MMP14P50281 582 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 GATAD2AQ86YP4 633 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 PPP1R14AQ96A00 147 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 BBS4Q96RK4 519 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 FAM47E-STBD1D6RA91 191 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 PTPN3P26045 913 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 CRY1Q16526 586 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 SLC41A1Q8IVJ1 513 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 WDR18Q9BV38 432 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 POLR1EQ9GZS1 481 aaKnown RBP17.47■□□□□ 0.39
PTPRF-209ENST00000438120 ALG9Q9H6U8 611 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 KLHL28Q9NXS3 571 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 PRKAG3Q9UGI9 489 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 UMODL1Q5DID0 1318 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 TBC1D3BA6NDS4 549 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 FAM220BPB1ANY3 271 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 XYLBO75191 536 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 GTF2E2P29084 291 aaKnown RBP17.47■□□□□ 0.39
PTPRF-209ENST00000438120 NUP107P57740 925 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 DGKKQ5KSL6 1271 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 CATSPERGQ6ZRH7 1159 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 ZNF75CPQ92670 426 aaPredicted RBP17.47■□□□□ 0.39
PTPRF-209ENST00000438120 SLC27A5Q9Y2P5 690 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 HS6ST1O60243 411 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 SMIM10L2AP0DMW4 78 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 SMIM10L2BP0DMW5 78 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 SERPINH1P50454 418 aaKnown RBP17.47■□□□□ 0.39
PTPRF-209ENST00000438120 XRCC4Q13426 336 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 TINF2Q9BSI4 451 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 CATSPERZQ9NTU4 200 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 PIAS1O75925 651 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 CYP2A6P11509 494 aaPredicted RBP17.47■□□□□ 0.39
PTPRF-209ENST00000438120 MAMLD1Q13495 774 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 HEATR4Q86WZ0 1026 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 DDHD1Q8NEL9 900 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 ZFYVE1Q9HBF4 777 aa17.47■□□□□ 0.39
PTPRF-209ENST00000438120 PSMA3P25788 255 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 RPA3P35244 121 aaPredicted RBP17.46■□□□□ 0.39
PTPRF-209ENST00000438120 EPS8L1Q8TE68 723 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 WNT8BQ93098 351 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 MYLK2Q9H1R3 596 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 FBXO6Q9NRD1 293 aaPredicted RBP17.46■□□□□ 0.39
PTPRF-209ENST00000438120 UXTQ9UBK9 157 aaPredicted RBP17.46■□□□□ 0.39
PTPRF-209ENST00000438120 ZBTB14O43829 449 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 CLPTM1O96005 669 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 GPR15P49685 360 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 CSGALNACT1Q8TDX6 532 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 GDPD5Q8WTR4 605 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 VPS45Q9NRW7 570 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 FRMPD1Q5SYB0 1578 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 FAM25AB3EWG3 89 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 FAM25CB3EWG5 89 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 FAM25GB3EWG6 89 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 H3BN98 237 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 ATP6V1G2O95670 118 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 ATP5C1P36542 298 aaKnown RBP17.46■□□□□ 0.39
PTPRF-209ENST00000438120 GPSM1Q86YR5 675 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 HIC2Q96JB3 615 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 TM6SF2Q9BZW4 377 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 ZCCHC2Q9C0B9 1178 aaKnown RBP17.46■□□□□ 0.39
PTPRF-209ENST00000438120 ITSN1Q15811 1721 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 HACD1B0YJ81 288 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 MTA2O94776 668 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 MAPK10P53779 464 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 PFKFB4Q16877 469 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms