RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 TFB1MQ8WVM0 346 aaKnown RBP15.21■□□□□ 0.03
USP4-203ENST00000415188 CASP10Q92851 521 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 KLHL29Q96CT2 875 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 CFAP36Q96G28 342 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 EBNA1BP2Q99848 306 aaKnown RBP15.21■□□□□ 0.03
USP4-203ENST00000415188 ARHGEF3Q9NR81 526 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 FZD10Q9ULW2 581 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 RAD54BQ9Y620 910 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 A0A0A0MRY4 1105 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 KLF11O14901 512 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 KRT38O76015 456 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 UNC5CO95185 931 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 TGDSO95455 350 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 ATP6V1G2O95670 118 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 APRTP07741 180 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 NPR3P17342 541 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 SP100P23497 879 aaPredicted RBP15.2■□□□□ 0.02
USP4-203ENST00000415188 LMO2P25791 158 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 CNTFP26441 200 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 PLA2G5P39877 138 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 SULT1E1P49888 294 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 LILRA4P59901 499 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 GBE1Q04446 702 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 SF3A3Q12874 501 aaKnown RBP eCLIP15.2■□□□□ 0.02
USP4-203ENST00000415188 NAB1Q13506 487 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 NCBP2-AS2Q69YL0 99 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 OTOAQ7RTW8 1153 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 OSTM1Q86WC4 334 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 TMEM86AQ8N2M4 240 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 GSDMBQ8TAX9 411 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 CCDC110Q8TBZ0 833 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 CLEC4CQ8WTT0 213 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 INPP5DQ92835 1189 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 NT5C3BQ969T7 300 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 SPATA13Q96N96 652 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 SLC2A13Q96QE2 648 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 LRRC37BQ96QE4 947 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 GAD1Q99259 594 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 MANSC1Q9H8J5 431 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 MIOSQ9NXC5 875 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 TRIOO75962 3097 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 TSC2P49815 1807 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 FAM159BA6NKW6 160 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 GABRDO14764 452 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 OPHN1O60890 802 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 EPCAMP16422 314 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 HOXB8P17481 243 aaPredicted RBP15.2■□□□□ 0.02
USP4-203ENST00000415188 TFE3P19532 575 aaPredicted RBP15.2■□□□□ 0.02
USP4-203ENST00000415188 MLH1P40692 756 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 ETV4P43268 484 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 ZNF135P52742 658 aaPredicted RBP15.2■□□□□ 0.02
USP4-203ENST00000415188 NRLP54845 237 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 SOX4Q06945 474 aaPredicted RBP15.2■□□□□ 0.02
USP4-203ENST00000415188 DBN1Q16643 649 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 PARP6Q2NL67 630 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 STEAP4Q687X5 459 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 TBC1D1Q86TI0 1168 aaPredicted RBP15.2■□□□□ 0.02
USP4-203ENST00000415188 PIGZQ86VD9 579 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 DEFB106AQ8N104 65 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 AGGF1Q8N302 714 aaeCLIP15.2■□□□□ 0.02
USP4-203ENST00000415188 ZNF276Q8N554 614 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 CCDC185Q8N715 623 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 C12orf76Q8N812 135 aaPredicted RBP15.2■□□□□ 0.02
USP4-203ENST00000415188 RAB3IL1Q8TBN0 382 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 HTR3CQ8WXA8 447 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 FAM122AQ96E09 287 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 ZFP42Q96MM3 310 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 FAM193BQ96PV7 902 aaPredicted RBP15.2■□□□□ 0.02
USP4-203ENST00000415188 PPP1R10Q96QC0 940 aaKnown RBP15.2■□□□□ 0.02
USP4-203ENST00000415188 NPY6RQ99463 290 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 TUBB6Q9BUF5 446 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 SLCO1B3Q9NPD5 702 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 DTLQ9NZJ0 730 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 KLK14Q9P0G3 267 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 KANSL3Q9P2N6 904 aa15.2■□□□□ 0.02
USP4-203ENST00000415188 PRG3Q9Y2Y8 225 aaPredicted RBP15.2■□□□□ 0.02
USP4-203ENST00000415188 ARL5CA6NH57 179 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 TRIM49D1C9J1S8 452 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 CYB561D2O14569 222 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 COPEO14579 308 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 NRP1O14786 923 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 PPP1R12AO14974 1030 aaPredicted RBP15.19■□□□□ 0.02
USP4-203ENST00000415188 ALDH2P05091 517 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 PTPN1P18031 435 aaKnown RBP15.19■□□□□ 0.02
USP4-203ENST00000415188 TKTP29401 623 aaKnown RBP15.19■□□□□ 0.02
USP4-203ENST00000415188 GLUD2P49448 558 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 RASSF2P50749 326 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 SCNN1GP51170 649 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 SLC10A2Q12908 348 aaPredicted RBP15.19■□□□□ 0.02
USP4-203ENST00000415188 PDK1Q15118 436 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 PRKD1Q15139 912 aaPredicted RBP15.19■□□□□ 0.02
USP4-203ENST00000415188 ZNF449Q6P9G9 518 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 UNC5AQ6ZN44 842 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 HFE2Q6ZVN8 426 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 PDZD4Q76G19 769 aaPredicted RBP15.19■□□□□ 0.02
USP4-203ENST00000415188 SIX6OS1Q8N1H7 587 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 PPM1NQ8N819 430 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 SPOCK2Q92563 424 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 EDAQ92838 391 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 NTAN1Q96AB6 310 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms