RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 LGI2Q8N0V4 545 aa14.42□□□□□ -0.1
GPNMB-203ENST00000409458 ELMOD1Q8N336 334 aa14.42□□□□□ -0.1
GPNMB-203ENST00000409458 ARL14EPQ8N8R7 260 aaPredicted RBP14.42□□□□□ -0.1
GPNMB-203ENST00000409458 PRICKLE1Q96MT3 831 aaPredicted RBP14.42□□□□□ -0.1
GPNMB-203ENST00000409458 CYP2S1Q96SQ9 504 aa14.42□□□□□ -0.1
GPNMB-203ENST00000409458 CORO1BQ9BR76 489 aa14.42□□□□□ -0.1
GPNMB-203ENST00000409458 WDR83Q9BRX9 315 aaKnown RBP14.42□□□□□ -0.1
GPNMB-203ENST00000409458 PHACTR1Q9C0D0 580 aa14.42□□□□□ -0.1
GPNMB-203ENST00000409458 MAN1C1Q9NR34 630 aa14.42□□□□□ -0.1
GPNMB-203ENST00000409458 KLHL8Q9P2G9 620 aaPredicted RBP14.42□□□□□ -0.1
GPNMB-203ENST00000409458 PCDHA11Q9Y5I1 949 aa14.42□□□□□ -0.1
GPNMB-203ENST00000409458 E7ESA3 106 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 OPA1O60313 960 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 CLASP2O75122 1294 aaKnown RBP14.41□□□□□ -0.1
GPNMB-203ENST00000409458 RFPL2O75678 378 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 APRTP07741 180 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 EPCAMP16422 314 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 TPSB2P20231 275 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 PSMB4P28070 264 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 FDFT1P37268 417 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 SLC11A2P49281 568 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 PAPOLAP51003 745 aaKnown RBP14.41□□□□□ -0.1
GPNMB-203ENST00000409458 ERVK-21P61565 698 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 PDIA2Q13087 525 aaKnown RBP14.41□□□□□ -0.1
GPNMB-203ENST00000409458 TPSAB1Q15661 275 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 KYNUQ16719 465 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 C5orf22Q49AR2 442 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 TTMPQ5BVD1 217 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 ZBED8Q8IZ13 594 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 UMODL1-AS1Q8N2C9 162 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 EXOC4Q96A65 974 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 ARL8AQ96BM9 186 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 SERPINB12Q96P63 405 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 GORASP1Q9BQQ3 440 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 HCFC1R1Q9NWW0 138 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 IGSF9Q9P2J2 1179 aa14.41□□□□□ -0.1
GPNMB-203ENST00000409458 AGO1Q9UL18 857 aaKnown RBP14.41□□□□□ -0.1
GPNMB-203ENST00000409458 A0A1W2PRU2 124 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 CCDC85CA6NKD9 419 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 MTSS1O43312 755 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 MAFKO60675 156 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 RNF40O75150 1001 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 MYL4P12829 197 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 GJA1P17302 382 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 CCNCP24863 283 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 SGSHP51688 502 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 NDST2P52849 883 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 ZXDBP98169 803 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 ZNF33AQ06730 810 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 GPM6BQ13491 265 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 STXBP5Q5T5C0 1151 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 ZNF534Q76KX8 674 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 PID1Q7Z2X4 250 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 CFAP52Q8N1V2 620 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 GOLGA6L1Q8N7Z2 621 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 ZSCAN18Q8TBC5 510 aaPredicted RBP14.4□□□□□ -0.1
GPNMB-203ENST00000409458 ADAMTS19Q8TE59 1207 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 MRPS31Q92665 395 aaKnown RBP14.4□□□□□ -0.1
GPNMB-203ENST00000409458 AZIN2Q96A70 460 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 HMCESQ96FZ2 354 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 ZNF419Q96HQ0 510 aaPredicted RBP14.4□□□□□ -0.1
GPNMB-203ENST00000409458 SAMD11Q96NU1 681 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 TSGA13Q96PP4 275 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 ATXN3LQ9H3M9 355 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 CERS4Q9HA82 394 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 ASAH2Q9NR71 780 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 CPQQ9Y646 472 aa14.4□□□□□ -0.1
GPNMB-203ENST00000409458 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.4□□□□□ -0.1
GPNMB-203ENST00000409458 HELZP42694 1942 aaKnown RBP14.4□□□□□ -0.1
GPNMB-203ENST00000409458 MYO18AQ92614 2054 aaKnown RBP14.4□□□□□ -0.1
GPNMB-203ENST00000409458 H3BNC9 293 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 TRDMT1O14717 391 aaKnown RBP14.39□□□□□ -0.11
GPNMB-203ENST00000409458 ALOX15BO15296 676 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 EIF3HO15372 352 aaKnown RBP eCLIP14.39□□□□□ -0.11
GPNMB-203ENST00000409458 ZBTB24O43167 697 aaPredicted RBP14.39□□□□□ -0.11
GPNMB-203ENST00000409458 HDCP19113 662 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 CDC25CP30307 473 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 CD68P34810 354 aaPredicted RBP14.39□□□□□ -0.11
GPNMB-203ENST00000409458 CCR2P41597 374 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 EIF3BP55884 814 aaKnown RBP14.39□□□□□ -0.11
GPNMB-203ENST00000409458 SMAD3P84022 425 aaKnown RBP14.39□□□□□ -0.11
GPNMB-203ENST00000409458 IFFO1Q0D2I5 559 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 PARP6Q2NL67 630 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 BBS9Q3SYG4 887 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 TEX44Q53QW1 395 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 PPP1R21Q6ZMI0 780 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 ANKMY2Q8IV38 441 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 AGGF1Q8N302 714 aaeCLIP14.39□□□□□ -0.11
GPNMB-203ENST00000409458 MAB21L3Q8N8X9 362 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 USP33Q8TEY7 942 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 AGAP3Q96P47 875 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 GBA3Q9H227 469 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 TMBIM4Q9HC24 238 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 ZFP37Q9Y6Q3 630 aaPredicted RBP14.39□□□□□ -0.11
GPNMB-203ENST00000409458 DOCK6Q96HP0 2047 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 RASA4BC9J798 803 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 GOLGA8KD6RF30 607 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 E7EVH7 732 aa14.39□□□□□ -0.11
GPNMB-203ENST00000409458 SCAMP3O14828 347 aaKnown RBP14.39□□□□□ -0.11
GPNMB-203ENST00000409458 PER2O15055 1255 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms