RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 KCNK12Q9HB15 430 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 HOMER3Q9NSC5 361 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 DTLQ9NZJ0 730 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 MARK1Q9P0L2 795 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 IGSF9Q9P2J2 1179 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 RASA4BC9J798 803 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 H7C0C1 242 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 RASA4O43374 803 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 PENKP01210 267 aaPredicted RBP18.54■□□□□ 0.56
SDC1-203ENST00000403076 ATP5OP48047 213 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 NDST2P52849 883 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 POLD3Q15054 466 aaPredicted RBP18.54■□□□□ 0.56
SDC1-203ENST00000403076 SIX1Q15475 284 aaPredicted RBP18.54■□□□□ 0.56
SDC1-203ENST00000403076 ZC3H18Q86VM9 953 aaKnown RBP18.54■□□□□ 0.56
SDC1-203ENST00000403076 PRELID2Q8N945 189 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 CCNYQ8ND76 341 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 CSGALNACT1Q8TDX6 532 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 MAGOHBQ96A72 148 aaKnown RBP18.54■□□□□ 0.56
SDC1-203ENST00000403076 XPO6Q96QU8 1125 aaKnown RBP18.54■□□□□ 0.56
SDC1-203ENST00000403076 CARD6Q9BX69 1037 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 SLC39A8Q9C0K1 460 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 KLC2Q9H0B6 622 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 MUC3BQ9H195 1237 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 HPS4Q9NQG7 708 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 ZNF212Q9UDV6 495 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 RAD54BQ9Y620 910 aa18.54■□□□□ 0.56
SDC1-203ENST00000403076 ILVBLA1L0T0 632 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 CTAGE15A4D2H0 777 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 ARHGAP42A6NI28 874 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 CTAGE8P0CG41 777 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 MX2P20592 715 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 OXCT1P55809 520 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 YBEYP58557 167 aaPredicted RBP18.53■□□□□ 0.56
SDC1-203ENST00000403076 GNA12Q03113 381 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 PDK1Q15118 436 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 NOMO1Q15155 1222 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 CCNG2Q16589 344 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 RNF219Q5W0B1 726 aaPredicted RBP18.53■□□□□ 0.56
SDC1-203ENST00000403076 DARS2Q6PI48 645 aaKnown RBP18.53■□□□□ 0.56
SDC1-203ENST00000403076 CTAGE6Q86UF2 777 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 CTAGE4Q8IX94 777 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 ZNF557Q8N988 423 aaPredicted RBP18.53■□□□□ 0.56
SDC1-203ENST00000403076 SPATA4Q8NEY3 305 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 FIBINQ8TAL6 211 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 P2RY11Q96G91 374 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 SPON2Q9BUD6 331 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 FRMD8P1Q9BZ68 369 aaPredicted RBP18.53■□□□□ 0.56
SDC1-203ENST00000403076 MAGEH1Q9H213 219 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 L2HGDHQ9H9P8 463 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 GTSE1Q9NYZ3 720 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 TBC1D30Q9Y2I9 924 aa18.53■□□□□ 0.56
SDC1-203ENST00000403076 DOCK4Q8N1I0 1966 aa18.52■□□□□ 0.56
SDC1-203ENST00000403076 CCDC188H7C350 402 aa18.52■□□□□ 0.56
SDC1-203ENST00000403076 PPP1R12AO14974 1030 aaPredicted RBP18.52■□□□□ 0.56
SDC1-203ENST00000403076 NCAM2O15394 837 aa18.52■□□□□ 0.56
SDC1-203ENST00000403076 ASGR2P07307 311 aa18.52■□□□□ 0.56
SDC1-203ENST00000403076 RBP3P10745 1247 aa18.52■□□□□ 0.56
SDC1-203ENST00000403076 ITPRIPL2Q3MIP1 535 aa18.52■□□□□ 0.56
SDC1-203ENST00000403076 PARP15Q460N3 678 aa18.52■□□□□ 0.56
SDC1-203ENST00000403076 FSCBQ5H9T9 825 aa18.52■□□□□ 0.56
SDC1-203ENST00000403076 IL31Q6EBC2 164 aa18.52■□□□□ 0.56
SDC1-203ENST00000403076 CXorf57Q6NSI4 855 aaKnown RBP18.52■□□□□ 0.56
SDC1-203ENST00000403076 ARHGAP12Q8IWW6 846 aa18.52■□□□□ 0.56
SDC1-203ENST00000403076 TP53INP2Q8IXH6 220 aa18.52■□□□□ 0.56
SDC1-203ENST00000403076 KLHL7Q8IXQ5 586 aa18.52■□□□□ 0.56
SDC1-203ENST00000403076 SLC44A3Q8N4M1 653 aa18.52■□□□□ 0.56
SDC1-203ENST00000403076 ATPAF2Q8N5M1 289 aa18.52■□□□□ 0.56
SDC1-203ENST00000403076 WFDC5Q8TCV5 224 aa18.52■□□□□ 0.56
SDC1-203ENST00000403076 NOL6Q9H6R4 1146 aaKnown RBP18.52■□□□□ 0.56
SDC1-203ENST00000403076 RBM12Q9NTZ6 932 aaKnown RBP18.52■□□□□ 0.56
SDC1-203ENST00000403076 KIAA1522Q9P206 1035 aaPredicted RBP18.52■□□□□ 0.56
SDC1-203ENST00000403076 CLEC4EQ9ULY5 219 aa18.52■□□□□ 0.56
SDC1-203ENST00000403076 MYOFQ9NZM1 2061 aa18.51■□□□□ 0.55
SDC1-203ENST00000403076 HOXC11O43248 304 aaPredicted RBP18.51■□□□□ 0.55
SDC1-203ENST00000403076 LIASO43766 372 aa18.51■□□□□ 0.55
SDC1-203ENST00000403076 PHF2O75151 1096 aa18.51■□□□□ 0.55
SDC1-203ENST00000403076 ETFBP38117 255 aa18.51■□□□□ 0.55
SDC1-203ENST00000403076 PAPOLAP51003 745 aaKnown RBP18.51■□□□□ 0.55
SDC1-203ENST00000403076 C2orf54Q08AI8 447 aa18.51■□□□□ 0.55
SDC1-203ENST00000403076 BYSLQ13895 437 aaKnown RBP18.51■□□□□ 0.55
SDC1-203ENST00000403076 AFMIDQ63HM1 303 aa18.51■□□□□ 0.55
SDC1-203ENST00000403076 B4GALNT4Q76KP1 1039 aa18.51■□□□□ 0.55
SDC1-203ENST00000403076 OR7D4Q8NG98 312 aa18.51■□□□□ 0.55
SDC1-203ENST00000403076 HMCESQ96FZ2 354 aa18.51■□□□□ 0.55
SDC1-203ENST00000403076 SLC2A11Q9BYW1 496 aa18.51■□□□□ 0.55
SDC1-203ENST00000403076 DDX47Q9H0S4 455 aaKnown RBP18.51■□□□□ 0.55
SDC1-203ENST00000403076 LRRC19Q9H756 370 aa18.51■□□□□ 0.55
SDC1-203ENST00000403076 DNAJC17Q9NVM6 304 aaKnown RBP18.51■□□□□ 0.55
SDC1-203ENST00000403076 DNPEPQ9ULA0 475 aa18.51■□□□□ 0.55
SDC1-203ENST00000403076 ZNF148Q9UQR1 794 aa18.51■□□□□ 0.55
SDC1-203ENST00000403076 A0A0D9SEW6 157 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 OTOL1A6NHN0 477 aaPredicted RBP18.5■□□□□ 0.55
SDC1-203ENST00000403076 CSKP41240 450 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 GARSP41250 739 aaKnown RBP18.5■□□□□ 0.55
SDC1-203ENST00000403076 NUMBP49757 651 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 GALNT2Q10471 571 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 AP1B1Q10567 949 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 LMAN2Q12907 356 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 XRCC4Q13426 336 aa18.5■□□□□ 0.55
SDC1-203ENST00000403076 ZNF783Q6ZMS7 281 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms