RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 RNASEH1O60930 286 aaKnown RBP13.83□□□□□ -0.2
VCX3A-202ENST00000398729 MMEP08473 750 aa13.83□□□□□ -0.2
VCX3A-202ENST00000398729 NNMTP40261 264 aa13.83□□□□□ -0.2
VCX3A-202ENST00000398729 SULT1E1P49888 294 aa13.83□□□□□ -0.2
VCX3A-202ENST00000398729 POLR2FP61218 127 aaKnown RBP13.83□□□□□ -0.2
VCX3A-202ENST00000398729 RPS14P62263 151 aaKnown RBP13.83□□□□□ -0.2
VCX3A-202ENST00000398729 MYL5Q02045 173 aa13.83□□□□□ -0.2
VCX3A-202ENST00000398729 ARID5BQ14865 1188 aa13.83□□□□□ -0.2
VCX3A-202ENST00000398729 FAM102AQ5T9C2 384 aaPredicted RBP13.83□□□□□ -0.2
VCX3A-202ENST00000398729 DCAF12L1Q5VU92 463 aa13.83□□□□□ -0.2
VCX3A-202ENST00000398729 FBXL22Q6P050 247 aa13.83□□□□□ -0.2
VCX3A-202ENST00000398729 SND1Q7KZF4 910 aaKnown RBP eCLIP13.83□□□□□ -0.2
VCX3A-202ENST00000398729 CIR1Q86X95 450 aaPredicted RBP13.83□□□□□ -0.2
VCX3A-202ENST00000398729 ZNF677Q86XU0 584 aa13.83□□□□□ -0.2
VCX3A-202ENST00000398729 APCDD1Q8J025 514 aa13.83□□□□□ -0.2
VCX3A-202ENST00000398729 HDDC3Q8N4P3 179 aa13.83□□□□□ -0.2
VCX3A-202ENST00000398729 EPS8L1Q8TE68 723 aa13.83□□□□□ -0.2
VCX3A-202ENST00000398729 MRGPRX3Q96LB0 322 aa13.83□□□□□ -0.2
VCX3A-202ENST00000398729 RPRD1AQ96P16 312 aaPredicted RBP13.83□□□□□ -0.2
VCX3A-202ENST00000398729 PPP1R9BQ96SB3 815 aa13.83□□□□□ -0.2
VCX3A-202ENST00000398729 RSPH9Q9H1X1 276 aaPredicted RBP13.83□□□□□ -0.2
VCX3A-202ENST00000398729 WDCPQ9H6R7 721 aa13.83□□□□□ -0.2
VCX3A-202ENST00000398729 FAM207AQ9NSI2 230 aaPredicted RBP13.83□□□□□ -0.2
VCX3A-202ENST00000398729 TMEM51Q9NW97 253 aa13.83□□□□□ -0.2
VCX3A-202ENST00000398729 VANGL2Q9ULK5 521 aa13.83□□□□□ -0.2
VCX3A-202ENST00000398729 SCML1Q9UN30 329 aa13.83□□□□□ -0.2
VCX3A-202ENST00000398729 PAXBP1Q9Y5B6 917 aa13.83□□□□□ -0.2
VCX3A-202ENST00000398729 PCDH15Q96QU1 1955 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.82□□□□□ -0.2
VCX3A-202ENST00000398729 A0A1B0GTW7 788 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 TARSL2A2RTX5 802 aaKnown RBP13.82□□□□□ -0.2
VCX3A-202ENST00000398729 SIN3BO75182 1162 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 PAGE1O75459 146 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 GFPT2O94808 682 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 F9P00740 461 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 CD59P13987 128 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 PDGFRAP16234 1089 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 CDK11BP21127 795 aaKnown RBP13.82□□□□□ -0.2
VCX3A-202ENST00000398729 ACSL1P33121 698 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 SOX5P35711 763 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 CTSOP43234 321 aaPredicted RBP13.82□□□□□ -0.2
VCX3A-202ENST00000398729 KLK7P49862 253 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 COPB1P53618 953 aaKnown RBP13.82□□□□□ -0.2
VCX3A-202ENST00000398729 CENPCQ03188 943 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 DEUP1Q05D60 604 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 SULT2A1Q06520 285 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 SFSWAPQ12872 951 aaKnown RBP13.82□□□□□ -0.2
VCX3A-202ENST00000398729 ZNF177Q13360 481 aaPredicted RBP13.82□□□□□ -0.2
VCX3A-202ENST00000398729 AUHQ13825 339 aaKnown RBP13.82□□□□□ -0.2
VCX3A-202ENST00000398729 BRMS1LQ5PSV4 323 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 CCDC183Q5T5S1 534 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 NAA35Q5VZE5 725 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 XYLT1Q86Y38 959 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 DHX40Q8IX18 779 aaKnown RBP13.82□□□□□ -0.2
VCX3A-202ENST00000398729 MINDY1Q8N5J2 469 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 OR2I1PQ8NGU4 316 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 CPA5Q8WXQ8 436 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 IGSF8Q969P0 613 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 PCMTD1Q96MG8 357 aaPredicted RBP13.82□□□□□ -0.2
VCX3A-202ENST00000398729 SPAG5Q96R06 1193 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 BTBD1Q9H0C5 482 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 SIK2Q9H0K1 926 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 MIR1-1HGQ9H1L0 117 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 MTG2Q9H4K7 406 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 NLRC4Q9NPP4 1024 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 PIGVQ9NUD9 493 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 NCKAP1Q9Y2A7 1128 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 HS3ST4Q9Y661 456 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 ITIH6Q6UXX5 1313 aa13.82□□□□□ -0.2
VCX3A-202ENST00000398729 EDDM13A0A1B0GTR0 161 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 FAM170AA1A519 330 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 TTC34A8MYJ7 566 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 GOLGA8SH3BPF8 625 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 OPHN1O60890 802 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 MZF1P28698 734 aaPredicted RBP13.81□□□□□ -0.2
VCX3A-202ENST00000398729 CXCR3P49682 368 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 PLK1P53350 603 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 NOMO3P69849 1222 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 CDR2Q01850 454 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 SLC25A52Q3SY17 297 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 SOWAHCQ53LP3 525 aaPredicted RBP13.81□□□□□ -0.2
VCX3A-202ENST00000398729 C2CD6Q53TS8 623 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 OTUD1Q5VV17 481 aaPredicted RBP13.81□□□□□ -0.2
VCX3A-202ENST00000398729 USP30Q70CQ3 517 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 RAB44Q7Z6P3 723 aaPredicted RBP13.81□□□□□ -0.2
VCX3A-202ENST00000398729 PROSER1Q86XN7 944 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 ZCCHC9Q8N567 271 aaKnown RBP13.81□□□□□ -0.2
VCX3A-202ENST00000398729 GANCQ8TET4 914 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 SNX19Q92543 992 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 NT5C3BQ969T7 300 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 PGAP3Q96FM1 320 aaPredicted RBP13.81□□□□□ -0.2
VCX3A-202ENST00000398729 RPL10LQ96L21 214 aaKnown RBP13.81□□□□□ -0.2
VCX3A-202ENST00000398729 ZDHHC5Q9C0B5 715 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 TKTL2Q9H0I9 626 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 SGK2Q9HBY8 427 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 ARHGEF38Q9NXL2 777 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 LIMA1Q9UHB6 759 aaKnown RBP13.81□□□□□ -0.2
VCX3A-202ENST00000398729 EIF2B4Q9UI10 523 aaKnown RBP13.81□□□□□ -0.2
VCX3A-202ENST00000398729 SLCO3A1Q9UIG8 710 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 NOCTQ9UK39 431 aaKnown RBP13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms