RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 ANKRD20A2Q5SQ80 823 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 SPOUT1Q5T280 376 aaKnown RBP11.08□□□□□ -0.64
NEDD9-201ENST00000379433 ANKRD20A1Q5TYW2 823 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 ANKRD20A3Q5VUR7 823 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 DRICH1Q6PGQ1 229 aaPredicted RBP11.08□□□□□ -0.64
NEDD9-201ENST00000379433 LVRNQ6Q4G3 990 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 RFX8Q6ZV50 586 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 ECHDC2Q86YB7 292 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 RTP3Q9BQQ7 232 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 UNKQ9C0B0 810 aaKnown RBP11.08□□□□□ -0.64
NEDD9-201ENST00000379433 POLG2Q9UHN1 485 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 RABGEF1Q9UJ41 708 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 FZD10Q9ULW2 581 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 A0A1W2PRQ8 180 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 TTC24A2A3L6 582 aaPredicted RBP11.08□□□□□ -0.64
NEDD9-201ENST00000379433 FAM25EA8MYX2 175 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 KPNA6O60684 536 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 JCHAINP01591 159 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 DRD4P21917 467 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 MGAT1P26572 445 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 ADRA1BP35368 520 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 ITKQ08881 620 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 TUSC3Q13454 348 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 LRP8Q14114 963 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 PCBP1Q15365 356 aaKnown RBP eCLIP11.08□□□□□ -0.64
NEDD9-201ENST00000379433 SLC45A4Q5BKX6 768 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 ARHGAP36Q6ZRI8 547 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 TAC4Q86UU9 113 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 THEM5Q8N1Q8 247 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 FAM111AQ96PZ2 611 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 ZNF670Q9BS34 389 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 COLEC11Q9BWP8 271 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 HMX1Q9NP08 348 aaPredicted RBP11.08□□□□□ -0.64
NEDD9-201ENST00000379433 PCDH12Q9NPG4 1184 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 ACSS2Q9NR19 701 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 PSMC3IPQ9P2W1 217 aaPredicted RBP11.08□□□□□ -0.64
NEDD9-201ENST00000379433 MKL2Q9ULH7 1088 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 MAGED1Q9Y5V3 778 aaPredicted RBP11.08□□□□□ -0.64
NEDD9-201ENST00000379433 XIRP2A4UGR9 3374 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 A0A1W2PQ45 241 aaPredicted RBP11.07□□□□□ -0.64
NEDD9-201ENST00000379433 A0A1W2PQY0 241 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 FAM47DPA6NHR8 397 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 H3BRJ5 948 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 GABRDO14764 452 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 PCNAP12004 261 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 NEK2P51955 445 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 SLC5A3P53794 718 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 NAA25Q14CX7 972 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 DPYSL2Q16555 572 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 OTUD1Q5VV17 481 aaPredicted RBP11.07□□□□□ -0.64
NEDD9-201ENST00000379433 NPWQ8N729 165 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 PITPNM3Q9BZ71 974 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 VCX3BQ9H321 246 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 LRFN2Q9ULH4 789 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 TRIM49D1C9J1S8 452 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 KDM1AO60341 852 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 KITP10721 976 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 FOXN2P32314 431 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 PTPN9P43378 593 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 WDR4P57081 412 aaKnown RBP11.07□□□□□ -0.64
NEDD9-201ENST00000379433 BPIFB3P59826 476 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 EFEMP1Q12805 493 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 CLLU1OSQ5K130 101 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 ZDHHC17Q8IUH5 632 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 CDKL3Q8IVW4 592 aaPredicted RBP11.07□□□□□ -0.64
NEDD9-201ENST00000379433 CCDC197Q8NCU1 140 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 TCP10LQ8TDR4 215 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 TTC25Q96NG3 672 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 MECRQ9BV79 373 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 ABCF3Q9NUQ8 709 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 PTCH2Q9Y6C5 1203 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 LRIG2O94898 1065 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 TGM2P21980 687 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 CDC25CP30307 473 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 PCSK7Q16549 785 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 XKR4Q5GH76 650 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 TRABD2AQ86V40 505 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 CAND1Q86VP6 1230 aaKnown RBP11.07□□□□□ -0.64
NEDD9-201ENST00000379433 JAZF1Q86VZ6 243 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 ANKS4BQ8N8V4 417 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 OR52K1Q8NGK4 314 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 SVIPQ8NHG7 77 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 STK32AQ8WU08 396 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 ZNF296Q8WUU4 475 aaPredicted RBP11.07□□□□□ -0.64
NEDD9-201ENST00000379433 PAWRQ96IZ0 340 aaKnown RBP11.07□□□□□ -0.64
NEDD9-201ENST00000379433 LBHD1Q9BQE6 289 aaPredicted RBP11.07□□□□□ -0.64
NEDD9-201ENST00000379433 DMAP1Q9NPF5 467 aaPredicted RBP11.07□□□□□ -0.64
NEDD9-201ENST00000379433 PCMTD2Q9NV79 361 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 TBC1D13Q9NVG8 400 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 MARCOQ9UEW3 520 aaPredicted RBP11.07□□□□□ -0.64
NEDD9-201ENST00000379433 CDH9Q9ULB4 789 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 SZT2Q5T011 3432 aa11.07□□□□□ -0.64
NEDD9-201ENST00000379433 ZNF638Q14966 1978 aaKnown RBP11.06□□□□□ -0.64
NEDD9-201ENST00000379433 SHROOM3Q8TF72 1996 aa11.06□□□□□ -0.64
NEDD9-201ENST00000379433 C2orf71A6NGG8 1288 aa11.06□□□□□ -0.64
NEDD9-201ENST00000379433 MUSKO15146 869 aa11.06□□□□□ -0.64
NEDD9-201ENST00000379433 ALDH1A1P00352 501 aa11.06□□□□□ -0.64
NEDD9-201ENST00000379433 ERVK-10P10266 1014 aa11.06□□□□□ -0.64
NEDD9-201ENST00000379433 CENPAP49450 140 aa11.06□□□□□ -0.64
NEDD9-201ENST00000379433 CTXN3Q4LDR2 81 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms