RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ZNF557Q8N988 423 aaPredicted RBP22.77■■□□□ 1.24
SHMT1-203ENST00000354098 CATSPERBQ9H7T0 1116 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 ZDHHC4Q9NPG8 344 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 HCN2Q9UL51 889 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 A0A0D9SEW6 157 aa22.76■■□□□ 1.23
SHMT1-203ENST00000354098 LRRD1A4D1F6 860 aa22.76■■□□□ 1.23
SHMT1-203ENST00000354098 C3orf70A6NLC5 250 aaPredicted RBP22.76■■□□□ 1.23
SHMT1-203ENST00000354098 KRT1P04264 644 aa22.76■■□□□ 1.23
SHMT1-203ENST00000354098 DCNP07585 359 aaKnown RBP22.76■■□□□ 1.23
SHMT1-203ENST00000354098 RHOCP08134 193 aa22.76■■□□□ 1.23
SHMT1-203ENST00000354098 ERCC2P18074 760 aa22.76■■□□□ 1.23
SHMT1-203ENST00000354098 AMPD1P23109 780 aa22.76■■□□□ 1.23
SHMT1-203ENST00000354098 PDK2Q15119 407 aa22.76■■□□□ 1.23
SHMT1-203ENST00000354098 PEX26Q7Z412 305 aa22.76■■□□□ 1.23
SHMT1-203ENST00000354098 SETD3Q86TU7 594 aaPredicted RBP22.76■■□□□ 1.23
SHMT1-203ENST00000354098 SYCE1Q8N0S2 351 aa22.76■■□□□ 1.23
SHMT1-203ENST00000354098 RNF25Q96BH1 459 aaPredicted RBP22.76■■□□□ 1.23
SHMT1-203ENST00000354098 AMFRQ9UKV5 643 aa22.76■■□□□ 1.23
SHMT1-203ENST00000354098 MFHAS1Q9Y4C4 1052 aa22.76■■□□□ 1.23
SHMT1-203ENST00000354098 WASH4PA8MWX3 477 aa22.75■■□□□ 1.23
SHMT1-203ENST00000354098 FGF10O15520 208 aaPredicted RBP22.75■■□□□ 1.23
SHMT1-203ENST00000354098 CTNNA1P35221 906 aaKnown RBP22.75■■□□□ 1.23
SHMT1-203ENST00000354098 TNFRSF4P43489 277 aa22.75■■□□□ 1.23
SHMT1-203ENST00000354098 ZNF135P52742 658 aaPredicted RBP22.75■■□□□ 1.23
SHMT1-203ENST00000354098 PITRM1Q5JRX3 1037 aa22.75■■□□□ 1.23
SHMT1-203ENST00000354098 C6orf118Q5T5N4 469 aa22.75■■□□□ 1.23
SHMT1-203ENST00000354098 Q6ZS52 159 aa22.75■■□□□ 1.23
SHMT1-203ENST00000354098 SORCS1Q8WY21 1168 aa22.75■■□□□ 1.23
SHMT1-203ENST00000354098 ALG14Q96F25 216 aa22.75■■□□□ 1.23
SHMT1-203ENST00000354098 FEM1AQ9BSK4 669 aa22.75■■□□□ 1.23
SHMT1-203ENST00000354098 ETNK2Q9NVF9 386 aa22.75■■□□□ 1.23
SHMT1-203ENST00000354098 DDX56Q9NY93 547 aaKnown RBP22.75■■□□□ 1.23
SHMT1-203ENST00000354098 PCDHA3Q9Y5H8 950 aa22.75■■□□□ 1.23
SHMT1-203ENST00000354098 OR51B4Q9Y5P0 310 aa22.75■■□□□ 1.23
SHMT1-203ENST00000354098 RNF40O75150 1001 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 MAPKAPK2P49137 400 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 PLEKHG6Q3KR16 790 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 MBLAC2Q68D91 279 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 MAP7D3Q8IWC1 876 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 AHI1Q8N157 1196 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 NETO2Q8NC67 525 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 OSBPL6Q9BZF3 934 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 CIPCQ9C0C6 399 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 MUC3BQ9H195 1237 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 RETREG1Q9H6L5 497 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 NOL6Q9H6R4 1146 aaKnown RBP22.74■■□□□ 1.23
SHMT1-203ENST00000354098 ELOVL2Q9NXB9 296 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 CHRM1P11229 460 aaPredicted RBP22.74■■□□□ 1.23
SHMT1-203ENST00000354098 CTNNA2P26232 953 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 KIR2DL1P43626 348 aaPredicted RBP22.74■■□□□ 1.23
SHMT1-203ENST00000354098 PEX5P50542 639 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 C2orf27AQ580R0 203 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 ANKRD20A8PQ5CZ79 823 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 DGKKQ5KSL6 1271 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 NUDT18Q6ZVK8 323 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 KATNAL2Q8IYT4 538 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 OR7D4Q8NG98 312 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 PCDH19Q8TAB3 1148 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 CLDN23Q96B33 292 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 ZNF670Q9BS34 389 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 KLC2Q9H0B6 622 aa22.74■■□□□ 1.23
SHMT1-203ENST00000354098 RCOR3Q9P2K3 495 aaPredicted RBP22.74■■□□□ 1.23
SHMT1-203ENST00000354098 SBDSQ9Y3A5 250 aaKnown RBP eCLIP22.74■■□□□ 1.23
SHMT1-203ENST00000354098 ILVBLA1L0T0 632 aa22.73■■□□□ 1.23
SHMT1-203ENST00000354098 DCLK1O15075 740 aa22.73■■□□□ 1.23
SHMT1-203ENST00000354098 AOC1P19801 751 aa22.73■■□□□ 1.23
SHMT1-203ENST00000354098 PLK1P53350 603 aa22.73■■□□□ 1.23
SHMT1-203ENST00000354098 GNA12Q03113 381 aa22.73■■□□□ 1.23
SHMT1-203ENST00000354098 SLC12A1Q13621 1099 aa22.73■■□□□ 1.23
SHMT1-203ENST00000354098 PKN3Q6P5Z2 889 aa22.73■■□□□ 1.23
SHMT1-203ENST00000354098 MFSD7Q6UXD7 560 aa22.73■■□□□ 1.23
SHMT1-203ENST00000354098 BMP8AQ7Z5Y6 402 aa22.73■■□□□ 1.23
SHMT1-203ENST00000354098 WFIKKN2Q8TEU8 576 aa22.73■■□□□ 1.23
SHMT1-203ENST00000354098 CYB5D2Q8WUJ1 264 aa22.73■■□□□ 1.23
SHMT1-203ENST00000354098 ALG3Q92685 438 aa22.73■■□□□ 1.23
SHMT1-203ENST00000354098 STARD13Q9Y3M8 1113 aa22.73■■□□□ 1.23
SHMT1-203ENST00000354098 CCDC66A2RUB6 948 aa22.72■■□□□ 1.23
SHMT1-203ENST00000354098 DLL1O00548 723 aa22.72■■□□□ 1.23
SHMT1-203ENST00000354098 NCAM2O15394 837 aa22.72■■□□□ 1.23
SHMT1-203ENST00000354098 TIE1P35590 1138 aa22.72■■□□□ 1.23
SHMT1-203ENST00000354098 ACVRL1P37023 503 aa22.72■■□□□ 1.23
SHMT1-203ENST00000354098 CTSOP43234 321 aaPredicted RBP22.72■■□□□ 1.23
SHMT1-203ENST00000354098 OXCT1P55809 520 aa22.72■■□□□ 1.23
SHMT1-203ENST00000354098 LRRC32Q14392 662 aa22.72■■□□□ 1.23
SHMT1-203ENST00000354098 GAS6Q14393 721 aa22.72■■□□□ 1.23
SHMT1-203ENST00000354098 LLGL1Q15334 1064 aa22.72■■□□□ 1.23
SHMT1-203ENST00000354098 FBXO43Q4G163 708 aa22.72■■□□□ 1.23
SHMT1-203ENST00000354098 ODF2Q5BJF6 829 aa22.72■■□□□ 1.23
SHMT1-203ENST00000354098 EGFLAMQ63HQ2 1017 aa22.72■■□□□ 1.23
SHMT1-203ENST00000354098 NPWQ8N729 165 aa22.72■■□□□ 1.23
SHMT1-203ENST00000354098 TTC17Q96AE7 1141 aa22.72■■□□□ 1.23
SHMT1-203ENST00000354098 FAF2Q96CS3 445 aa22.72■■□□□ 1.23
SHMT1-203ENST00000354098 CELF6Q96J87 481 aaKnown RBP22.72■■□□□ 1.23
SHMT1-203ENST00000354098 ACOX2Q99424 681 aa22.72■■□□□ 1.23
SHMT1-203ENST00000354098 DLGAP2Q9P1A6 1054 aa22.72■■□□□ 1.23
SHMT1-203ENST00000354098 VPS28Q9UK41 221 aa22.72■■□□□ 1.23
SHMT1-203ENST00000354098 DDX3YO15523 660 aaKnown RBP22.71■■□□□ 1.23
SHMT1-203ENST00000354098 RAMP2O60895 175 aa22.71■■□□□ 1.23
SHMT1-203ENST00000354098 ZRANB2O95218 330 aaKnown RBP eCLIP22.71■■□□□ 1.23
SHMT1-203ENST00000354098 POLR2EP19388 210 aaKnown RBP22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms